Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01282 ATGGTGGGCTCCGAGGACTCTGGTACTTCTGGGGCCGCGGTGCAGCTCTCTGGCAATCGGAAATTGTTCTGGCGCTCGGCCTCGTGGTCTGCATCACGTTCCTCCCTTCACCATCCGGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGCAGTGGACCAAGCCGAATTTTCCCTGCCCCATTAACTCCAAGGTCGCAGCAGCATTGCAAAGCGAGGTCGTGTTTGCCTCCTTTACAACCTTTGTCCATAGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGGTCGGATGATATTGGTGAGTGGCCGCAGCCTCCTACACCAAGTGGCAGAGGAAATTGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCGGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAGGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCTGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCTTCTGAGGATATTACCAGTATACTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCGCGGTCGACGTCGTTGGTGATTGCCTATCTTATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCTGACCCCAATATGGGTTTTGCTTGCCAGTTATTACAATGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAGTTGCTCCACACTCGCCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCTACCTCATCTCTGGATTCTAGAGGTGCATTTATCATTCATGTACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAAATCGTTCGATATGAGAAGGTGCATGGGCCTATTTATGTAATTAAAGAAGGGGAAGAACCAACCAACTTTTGGGACTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAGAACTAAGCCTTATCCAGGGGAAAGGAGAGTTGATTCCTATGATTTAGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTCAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAGAGAGTTTGTATCAGCTCCACGGATATCGCTCTCTAGGGTCTATTCCGACTCGTTGATGATGGTGCATTTTTCTGCAAAACCTCCATCGCCTTCAGCAATTTCTTTGTCTTCGTCGTCTTCTTCGCCTATCCATCTTTCGCCAGACTCCCTTTCTTCTGATTCAAGTTCAAGTACCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCTTCTGCTTCTTCACCTACAGTTCAAGTTTCTTCAACTCTATCTAGTTTTTCTAACATGCATCTTATCTCATCCAATAGTTCCTTAGAATCGATGCCCAATGGTCCAGAAACTCGTGATGCAGTCCCTTTGGAATCAAGTTCTCGGTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTTGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAACAAGATTTCTTTCTCTCTTGATGCATCATTTAATATGAAAAAGGGCTCAGAGCCTATGGATAATGTTGAAGATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATCGAAAATGGAATGGATGTACGTGTAGGTTGCATGGCCACGAGCCAGGTCGAAACTGAAGTTGCTGGACAATCAGCTGGTTCATGGAAAAGCTATCCAAAACATTTTGAAGGCGGCATGGTATCCACTGTGTCAAATGGGAAGCAAGATGGTGAGTTTGTCCAACCAATGGTATACTGTTGGCCGGAGTTAGCAAAGATTGCAGCTTTTGACACAAGTTACCTTCATTCTAAAGCTGCCGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAATTCTTTTGACCATGATTTATCTCCGATTCAAGTAAAGAGGGACAAAGACTTGGTTGATGTAGAAAAGATAGACTGGGTTAAAGTTGGCCAATATGTGCTTACTGAAATAGGTCTGCCAGAAAACACAGAAATTAAGATCGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTTTTGTAG 2547 43.11 MVGSEDSGTSGAAVQLSGNRKLFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSSGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNCERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSTSSLDSRGAFIIHVPSAIFVWIGKNCEAIMERDARGAVVQIVRYEKVHGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELRTKPYPGERRVDSYDLDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMREFVSAPRISLSRVYSDSLMMVHFSAKPPSPSAISLSSSSSSPIHLSPDSLSSDSSSSTKYFSESSLDSPSASSPTVQVSSTLSSFSNMHLISSNSSLESMPNGPETRDAVPLESSSRSFSFPSKKFSPSLAERRGSAKSLTLPTMPCKIRATNSASRFLATQEDGKRKNKISFSLDASFNMKKGSEPMDNVEDEQTSSTQNFKNIENGMDVRVGCMATSQVETEVAGQSAGSWKSYPKHFEGGMVSTVSNGKQDGEFVQPMVYCWPELAKIAAFDTSYLHSKAAVVIFSPSRYLGKKDDMMLYIWVGNSFDHDLSPIQVKRDKDLVDVEKIDWVKVGQYVLTEIGLPENTEIKIVKEGEETEEFLARLSLL 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6496236 6500387 - CmoCh04G012820.1 Cmo04g01282 380257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01282 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 235 245 IPR016130 GO:0016311|GO:0016791
Cmo04g01282 848 Gene3D Severin 302 397 IPR029006 -
Cmo04g01282 848 PANTHER MKPA PROTEIN 1 842 - -
Cmo04g01282 848 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 210 271 IPR000387 GO:0016311|GO:0016791
Cmo04g01282 848 SMART VILL_6 300 397 IPR007122 GO:0051015
Cmo04g01282 848 Gene3D Protein tyrosine phosphatase superfamily 138 293 IPR029021 -
Cmo04g01282 848 Pfam Dual specificity phosphatase, catalytic domain 159 289 IPR000340 GO:0008138|GO:0016311
Cmo04g01282 848 ProSiteProfiles Dual specificity protein phosphatase domain profile. 151 293 IPR020422 GO:0006470|GO:0008138
Cmo04g01282 848 MobiDBLite consensus disorder prediction 570 602 - -
Cmo04g01282 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 146 292 IPR029021 -
Cmo04g01282 848 CDD DSP 152 286 - -
Cmo04g01282 848 MobiDBLite consensus disorder prediction 99 118 - -
Cmo04g01282 848 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 842 - -
Cmo04g01282 848 SMART dsp_5 151 290 IPR020422 GO:0006470|GO:0008138
Cmo04g01282 848 Pfam Gelsolin repeat 326 391 IPR007123 -
Cmo04g01282 848 MobiDBLite consensus disorder prediction 30 68 - -
Cmo04g01282 848 MobiDBLite consensus disorder prediction 521 550 - -
Cmo04g01282 848 MobiDBLite consensus disorder prediction 586 602 - -
Cmo04g01282 848 SUPERFAMILY Actin depolymerizing proteins 298 399 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00237 Cmo04g01282 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01282 Cmo-Chr4:6496236 Cmo18g00757 Cmo-Chr18:9203880 0 dispersed
Cmo04g01282 Cmo-Chr4:6496236 Cmo04g00237 Cmo-Chr4:1182084 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01282 - - csv:101223210 1482.62