Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01294 ATGAGAGCTTCAAATGATCATTTTTTCATCTGGATCCTTTGTGCTCTGTGCTTATCATCATCTCTTTCATCAGGATTCACTCCCGATGATAATTTTCTGATCGATTGTGGATCATCCTCCAATAGTACGGTGGGAGATCGTCTATTTATATCTGATGATCTTTCATCTAATATTCTTTCCAACCCAAATGGGAAATCTCTTTCCACTACAAGCAACGTATCTAGTTCATCTCCATTGTTCTTATTCTCATCTCTCCTTCGAACTGCAAAAATATTTGAAACAACTTCCAAATACAACTTCAAAATAAAGAAGCAGGGCAGGCACTGGATCCGCCTCTACTTTTACCCTTTTGTTTCTGGAAACATGGACTTGAGTTTGGCTAGATTTTCAGTTTCTGCTCAAAATATCACCCTTCTTAAAGAATTTCAGATGGATAGTGGCTCGGTAATCAAGGAATATTCTCTGAATGTTACTTCCAGTAATCTTGTTCTTACATTCACTCCCATGGTGAATTCATTTGCCTTCATCAATGCTTTGGAAGTTGTTTCTGTCCCTAATGAACTGATTCCCTCGAGTGTTCCCACTGTTGAGAAGCTTGTAAGAAGTTTGGGGAACAGGGCGTTGGAGACTGTTGCTAGAGTGAATATGGGCAATGAAACTGTGTCTCCGAATGATGATACTCTATCTCGCCTTTGGGTTGCGGATGGGCCATTCTTGATGCATAATGATCAGGTCATCGTTGGAAAGTTTGTGTCAAATCTTACAAAAGTGAATATGACAAGAGACTCTGAAATTATGGCCCCCCGTTCTGTATATGGAACAGCAACTCAATTAGGAGTTGATGCGGATGCCAATGCTAATGTTAATGTATCGTGGTCATTCGACGTCGATCCTGGCTATGAATATCTGATTCGTTATCATTTCTGTGATATTATAGATCTTTCTCTCGGATCGCTGTCCTTCAATGTTTATGTTAACTCATGGAAGGTTAAAGATCATCTTGATATTGGTAAGCTCACTTCGGGCATCCTAGGTGCACCCTATGTCCTGGACACCATAGCCAGTCCAATTGACAGCTCTAAGTTCAAAATCAGTGTTGGCCCTAGCAACTTTCATGAGTACTCAGCTGCCATTCTTAATGGGCTCGAGATCATGAAAATAAGCAATTCTCGGGGGAGCCTTGACGAACCCTCATTTGATTTAGACTCGAAGAAAGTTTCCAATGTGAAAGTTGGTCTTATATCAGGCTTGGTTGCTGGACTGCTTATTGCTGCTGTTTTGGCCACCCTTGTCATTGTGTTGTGCAGAAGAAGAAGGCGATTGGCGCTCGTTCGCCACTCGAAGGAAGAGGACAATTATGGTGTGAATGGAAGAGAAAGCAAGTATATCATTGGATCTGTTGGCTTTTCGAGCTCGAAAATTGGTTATCGATATCCTCTTGCAGCTATTCTGGAAGCTACAGATCATTTTAGTGAAAGTTTAGCCATTGGCCTTGGAGGGTTTGGGAAAGTTTACAAGGGAATGTTAAGGGACAACACAGAAGTGGCAGTGAAAAGAGGGACTTCGAAATCTCAGCAGGGTCTTGCAGAGTTTCGAACCGAAATCGAGATGCTATCCCAATTTCGCCACCGTCATTTGGTATCTCTGATCGGGTACTGTGATGAGCAAGATGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAAGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGAGGTCTGCATTGGCTCAGCTAGAGGACTTCACTACCTTCACACTGGCTCCACAAAGGCAATCATCCACAGAGATGTCAAAACTGCAAACATTCTTCTAGATCAAAACTACATGGCCAAAGTTGCAGACTTCGGACTCTCAAAGATCGGCCCCGAATTTGACAAGACTCATGTCAGTACAGCGGTGAAAGGAAGCTTTGGCTATCTCGATCCCGAGTACTTAACGACGCAGCAACTAACCGAAAAATCAGATGTGTACTCTTTTGGCGTGGTAATGTTTGAAATCCTTTGCGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAGAAGGTGAATTTAATTGAATGGGTGATGAGGAAGGGGAGAGATCAGCTGGAGGCGATCGTTGATGCTCGTATTGTCGAGGAAGTCGGGCTGGAATCTCTAAGAAAATACATAGAGACAGCAGATAAATGCTTGGCAGAATGCGGGATGGATCGTCCAACCATGGGAAACATTCTGTGGAATCTGGAGTGTGCACTCCAACTCCAAGGGAATGAAAGATCTCTTCATTTAAAGGAATCATCCTCACAAGCTGATCTTTCCAACAGTTGGGAGGCGAGTGTATCGACGACTCAATTCAGCACGGGAAGTGCTGTCGATATCGCCGGTGTTTCGATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2469 42.89 MRASNDHFFIWILCALCLSSSLSSGFTPDDNFLIDCGSSSNSTVGDRLFISDDLSSNILSNPNGKSLSTTSNVSSSSPLFLFSSLLRTAKIFETTSKYNFKIKKQGRHWIRLYFYPFVSGNMDLSLARFSVSAQNITLLKEFQMDSGSVIKEYSLNVTSSNLVLTFTPMVNSFAFINALEVVSVPNELIPSSVPTVEKLVRSLGNRALETVARVNMGNETVSPNDDTLSRLWVADGPFLMHNDQVIVGKFVSNLTKVNMTRDSEIMAPRSVYGTATQLGVDADANANVNVSWSFDVDPGYEYLIRYHFCDIIDLSLGSLSFNVYVNSWKVKDHLDIGKLTSGILGAPYVLDTIASPIDSSKFKISVGPSNFHEYSAAILNGLEIMKISNSRGSLDEPSFDLDSKKVSNVKVGLISGLVAGLLIAAVLATLVIVLCRRRRRLALVRHSKEEDNYGVNGRESKYIIGSVGFSSSKIGYRYPLAAILEATDHFSESLAIGLGGFGKVYKGMLRDNTEVAVKRGTSKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQDEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLEVCIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEILCGRPVIDPSLPREKVNLIEWVMRKGRDQLEAIVDARIVEEVGLESLRKYIETADKCLAECGMDRPTMGNILWNLECALQLQGNERSLHLKESSSQADLSNSWEASVSTTQFSTGSAVDIAGVSMSKVFAQMVREDMR 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6573721 6576189 + CmoCh04G012940.1 Cmo04g01294 380269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01294 822 Gene3D Phosphorylase Kinase; domain 1 459 565 - -
Cmo04g01294 822 CDD STKc_IRAK 496 760 - -
Cmo04g01294 822 PANTHER OS07G0166700 PROTEIN 17 815 IPR045272 GO:0004714|GO:0006468
Cmo04g01294 822 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 17 815 - -
Cmo04g01294 822 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Cmo04g01294 822 ProSiteProfiles Protein kinase domain profile. 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01294 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Cmo04g01294 822 Gene3D Transferase(Phosphotransferase) domain 1 566 785 - -
Cmo04g01294 822 SMART serkin_6 490 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01294 822 Gene3D - 206 389 - -
Cmo04g01294 822 Gene3D - 31 185 - -
Cmo04g01294 822 Pfam Protein tyrosine and serine/threonine kinase 495 688 IPR001245 GO:0004672|GO:0006468
Cmo04g01294 822 SUPERFAMILY Protein kinase-like (PK-like) 479 786 IPR011009 -
Cmo04g01294 822 Pfam Malectin-like domain 34 387 IPR024788 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01294 Cmo04g00256 ECH
Cmo04g00256 Cmo04g01294 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01294 Cmo-Chr4:6573721 Cmo01g01242 Cmo-Chr1:9971509 0 dispersed
Cmo02g00846 Cmo-Chr2:5146479 Cmo04g01294 Cmo-Chr4:6573721 0 wgd
Cmo20g00478 Cmo-Chr20:2222862 Cmo04g01294 Cmo-Chr4:6573721 0 wgd
Cmo04g00256 Cmo-Chr4:1274910 Cmo04g01294 Cmo-Chr4:6573721 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74269 PF12819 Malectin_like 1.80E-33 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01294 - - csv:101203398 1309.28