Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01302 ATGGTATCAGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCTTCTGTTGAAGGTGAAAATTCCAGCAGAGGTGGGGATGCGAGTGGTCGGGTTGATGGATTGTTATGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCGGTTATTCAGGCAAATAATTTGTTGGAAGATCGGAGCCAACTCGAGTCAGGGCCACTGAGCTCATTTGAATCAGGTCCCATTGGGACGTTCGTTGGAATCTATGATGGCCATGGAGGACCTGAAGCTGCAGAATTCATAAGTGATCGTCTGTTCAATAATATGAAGAAATTTATTCCAGAAAATCGGGGAGTATCTGCTGAAATTATAAACAAAGCATTCTTGGAGACAGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTAGTAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGCGAGAGGAGTTGCACTCGTTGCATCCCGGTGATCCGCAGATCGTTGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTCTTGCCCAAGTTCAGATTACCAGAACCATTCCACAAGCCAATTCTTAAAGCCGAACCTGCTATTGTAGTGCAGAAACTGTATCCGGAGGATCAGTTCCTTATCTTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAATGGGGTTGCAAGGAAACTGGTTAAAGCGGCTCTTCATGGAGCTGCAAAGAAAAGAGAAATGAGATACACAGACTTGAAGAAGATCGACCGCGGGGTAAGAAGGCATTTTCACGACGACATAACTGTTGTAGTATTGTTCCTGGATTCGCATTTGATTAGTCGAAGTCCGAGCTACGGACCGATGCTTTCAATCAGAGGAGGTTCTGGTATCCTGGCTAGATCGTAG 1155 43.98 MVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPIGTFVGIYDGHGGPEAAEFISDRLFNNMKKFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLSKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPGDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHGAAKKREMRYTDLKKIDRGVRRHFHDDITVVVLFLDSHLISRSPSYGPMLSIRGGSGILARS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6609446 6613719 + CmoCh04G013020.1 Cmo04g01302 380277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01302 384 SMART PP2C_4 41 355 IPR001932 -
Cmo04g01302 384 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Cmo04g01302 384 SUPERFAMILY PP2C-like 58 358 IPR036457 -
Cmo04g01302 384 Gene3D - 39 365 IPR036457 -
Cmo04g01302 384 PANTHER ALPHABET, ISOFORM E-RELATED 8 379 - -
Cmo04g01302 384 Pfam Protein phosphatase 2C 82 324 IPR001932 -
Cmo04g01302 384 CDD PP2Cc 50 357 IPR001932 -
Cmo04g01302 384 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Cmo04g01302 384 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 379 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01302 Cmo04g00262 ECH
Cmo04g00262 Cmo04g01302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01302 Cmo-Chr4:6609446 Cmo20g00737 Cmo-Chr20:3678588 0 dispersed
Cmo14g00170 Cmo-Chr14:759883 Cmo04g01302 Cmo-Chr4:6609446 0 wgd
Cmo04g00262 Cmo-Chr4:1306617 Cmo04g01302 Cmo-Chr4:6609446 0 wgd
Cmo04g01302 Cmo-Chr4:6609446 Cmo06g00334 Cmo-Chr6:1625882 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01302 K01102 - csv:101220760 735.717