Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01306 | ATGGGATGGTTTCTCTGTACTGGAGGTTCAAATAAGAGGGGAAAACAGCAGCAGCAGCAGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCGGCTTCAGAAAAGTTAATGGTAAAGCCGATATTTAATGGGAAGAACGAGGCTCTAAAAGATGAAGGTTCTGATCAGATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGATTGGAGAGCATAAACCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGCGATCAAAGACTCTTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATCTACATGATCTCCCACCCGACAAGAAACGACTTGATTGGAATATAAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGCTTAGAGTACTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAAATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACGTATGGATACTGTGCTCCTGAATATGCAATGACAGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTTGAAATTATTACTGGCAGAAAAGCCATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCACAACCCTTATTTAAAGACAGAAGGAAGTTTCCACAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGTCCCCTCATCGCCGATGTCGTCACGGCCCTCACATATCTTGCCTCCCAAAAATGCGATCCTGAAACGCAGCCAGTTCAAAGCGCCCGCAGTAGCTCGTCCACACCTAGATCTTCTAGAAGAGAACTGTGA | 1152 | 44.44 | MGWFLCTGGSNKRGKQQQQQQVQKKDDDPIPSASEKLMVKPIFNGKNEALKDEGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNIRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGENYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFPQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKCDPETQPVQSARSSSSTPRSSRREL | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6640283 | 6644958 | + | CmoCh04G013060.1 | Cmo04g01306 | 380281 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01306 | 383 | MobiDBLite | consensus disorder prediction | 360 | 383 | - | - | |
Cmo04g01306 | 383 | Pfam | Protein tyrosine and serine/threonine kinase | 82 | 295 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo04g01306 | 383 | ProSiteProfiles | Protein kinase domain profile. | 77 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01306 | 383 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
Cmo04g01306 | 383 | MobiDBLite | consensus disorder prediction | 6 | 31 | - | - | |
Cmo04g01306 | 383 | CDD | STKc_IRAK | 83 | 352 | - | - | |
Cmo04g01306 | 383 | MobiDBLite | consensus disorder prediction | 360 | 376 | - | - | |
Cmo04g01306 | 383 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 200 | 212 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g01306 | 383 | Gene3D | Phosphorylase Kinase; domain 1 | 48 | 153 | - | - | |
Cmo04g01306 | 383 | PANTHER | OS07G0668900 PROTEIN | 20 | 380 | - | - | |
Cmo04g01306 | 383 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 372 | IPR011009 | - | |
Cmo04g01306 | 383 | ProSitePatterns | Protein kinases ATP-binding region signature. | 83 | 106 | IPR017441 | GO:0005524 | |
Cmo04g01306 | 383 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL27 | 20 | 380 | - | - | |
Cmo04g01306 | 383 | SMART | serkin_6 | 77 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01306 | 383 | Gene3D | Transferase(Phosphotransferase) domain 1 | 154 | 374 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01306 | Cmo04g00265 | ECH | |
Cmo04g00265 | Cmo04g01306 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01306 | Cmo-Chr4:6640283 | Cmo14g00169 | Cmo-Chr14:757185 | 0 | dispersed | |
Cmo20g00489 | Cmo-Chr20:2288463 | Cmo04g01306 | Cmo-Chr4:6640283 | 3.13E-167 | wgd | |
Cmo04g00265 | Cmo-Chr4:1331189 | Cmo04g01306 | Cmo-Chr4:6640283 | 0 | wgd | |
Cmo04g01306 | Cmo-Chr4:6640283 | Cmo06g00339 | Cmo-Chr6:1641123 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74270 | PF07714 | PK_Tyr_Ser-Thr | 3.60E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01306 | - | - | csv:101221705 | 694.886 |