Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01306 ATGGGATGGTTTCTCTGTACTGGAGGTTCAAATAAGAGGGGAAAACAGCAGCAGCAGCAGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCGGCTTCAGAAAAGTTAATGGTAAAGCCGATATTTAATGGGAAGAACGAGGCTCTAAAAGATGAAGGTTCTGATCAGATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGATTGGAGAGCATAAACCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGCGATCAAAGACTCTTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATCTACATGATCTCCCACCCGACAAGAAACGACTTGATTGGAATATAAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGCTTAGAGTACTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAAATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACGTATGGATACTGTGCTCCTGAATATGCAATGACAGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTTGAAATTATTACTGGCAGAAAAGCCATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCACAACCCTTATTTAAAGACAGAAGGAAGTTTCCACAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGTCCCCTCATCGCCGATGTCGTCACGGCCCTCACATATCTTGCCTCCCAAAAATGCGATCCTGAAACGCAGCCAGTTCAAAGCGCCCGCAGTAGCTCGTCCACACCTAGATCTTCTAGAAGAGAACTGTGA 1152 44.44 MGWFLCTGGSNKRGKQQQQQQVQKKDDDPIPSASEKLMVKPIFNGKNEALKDEGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNIRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGENYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFPQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKCDPETQPVQSARSSSSTPRSSRREL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6640283 6644958 + CmoCh04G013060.1 Cmo04g01306 380281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01306 383 MobiDBLite consensus disorder prediction 360 383 - -
Cmo04g01306 383 Pfam Protein tyrosine and serine/threonine kinase 82 295 IPR001245 GO:0004672|GO:0006468
Cmo04g01306 383 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01306 383 MobiDBLite consensus disorder prediction 10 27 - -
Cmo04g01306 383 MobiDBLite consensus disorder prediction 6 31 - -
Cmo04g01306 383 CDD STKc_IRAK 83 352 - -
Cmo04g01306 383 MobiDBLite consensus disorder prediction 360 376 - -
Cmo04g01306 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Cmo04g01306 383 Gene3D Phosphorylase Kinase; domain 1 48 153 - -
Cmo04g01306 383 PANTHER OS07G0668900 PROTEIN 20 380 - -
Cmo04g01306 383 SUPERFAMILY Protein kinase-like (PK-like) 65 372 IPR011009 -
Cmo04g01306 383 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Cmo04g01306 383 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 20 380 - -
Cmo04g01306 383 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01306 383 Gene3D Transferase(Phosphotransferase) domain 1 154 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01306 Cmo04g00265 ECH
Cmo04g00265 Cmo04g01306 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01306 Cmo-Chr4:6640283 Cmo14g00169 Cmo-Chr14:757185 0 dispersed
Cmo20g00489 Cmo-Chr20:2288463 Cmo04g01306 Cmo-Chr4:6640283 3.13E-167 wgd
Cmo04g00265 Cmo-Chr4:1331189 Cmo04g01306 Cmo-Chr4:6640283 0 wgd
Cmo04g01306 Cmo-Chr4:6640283 Cmo06g00339 Cmo-Chr6:1641123 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74270 PF07714 PK_Tyr_Ser-Thr 3.60E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01306 - - csv:101221705 694.886