Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01310 ATGATGATGTTGAATCTTAATGATTCGATTATGAACCGTGACGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCTGCGGCGTTGGCGGCGGTCCAGTGCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCTGGTGGGTGGGGAGATTCTGGGTCTCCGATACTCAGGACCCAGTGGCTGAACCTGTCGCCGACGGCGGATTCTGGTGGCGGTGGAGGACAGCCAGAGCTGAAAACTGTGCAGCCGAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCTGCTATCAAATTTAGGGGAGTCGATGCAGATATAAACTTCAATATAAGTGACTACGACGAAGATATGAAACAAAACAATCTGAAAGAGGAGGAGGAGGAAGAAGAAGAAATGATGATGTTGAATCTTAATGATTCGATTATGAACCGTGACGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCTGCGGCGTTGGCGGCGGTCCAGTGCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCTGGTGGGTGGGGAGATTCTGGGTCTCCGATACTCAGGACCCAGTGGCTGAACCTGTCGCCGACGGCGGATTCTGGTGGCGGTGGAGGACAGCCAGAGCTGAAAACTGTGCAGCCGAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCTGCTATCAAATTTAGGGGAGTCGATGCAGATATAAACTTCAATATAAGTGACTACGACGAAGATATGAAACAAACAAAAAATCTAAACAAAGAAGAATTTGTGCATGTTCTACGTCGACAAAGTTCTGGAGTTTCTCGTGGAGGATCAAAGCTAAGAGGACTATCTGTTCAAAGATATGGACGATGGGAAACTCAAATGAATCAAATTATTGGAAAGAAGGGAACTGAGGAAAGGTCCGAGACGACGGTGGAAGCAAGTAATGGAGGCAATGGACATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTTCTCCAAAGCTCAACATTGAGAGACCAAAGAATGAAAACAATGGATATGCACATGGAATGGGTGGACAACAACCTAATACTCCTCCTTCCGTGTTCTCTGGTTTTTACTCTGCTTTTTTACCACGTAATCAGGAAAGAGGGAGAGAGACGATAAACAAGGAGTCGACGGGTTGGAGATGGCAAACGGCGAGGTCGATAGAAGGAAATGTGAACGAAGAAAAGAAGAAGACTATAGAAAGCCATGGTTCCAAGAGTGCAGCATCATCAGGATTCTCTCCCTCTCATAATTTTGGTTCATTTTATGCCCAAAACAACACACCTCTCCACACCAATCACTGCCTTCCAACGCCTTACACCAATATTTCTTGA 1872 47.92 MMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPCGVGGGPVPELVTQALFPVAGGWGDSGSPILRTQWLNLSPTADSGGGGGQPELKTVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQNNLKEEEEEEEEMMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPCGVGGGPVPELVTQALFPVAGGWGDSGSPILRTQWLNLSPTADSGGGGGQPELKTVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQTKNLNKEEFVHVLRRQSSGVSRGGSKLRGLSVQRYGRWETQMNQIIGKKGTEERSETTVEASNGGNGHNLDLSIGGIFNYHFSNSSPKLNIERPKNENNGYAHGMGGQQPNTPPSVFSGFYSAFLPRNQERGRETINKESTGWRWQTARSIEGNVNEEKKKTIESHGSKSAASSGFSPSHNFGSFYAQNNTPLHTNHCLPTPYTNIS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6668332 6672147 + CmoCh04G013100.1 Cmo04g01310 380285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01310 623 ProSiteProfiles AP2/ERF domain profile. 350 406 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 SUPERFAMILY DNA-binding domain 349 408 IPR016177 GO:0003677
Cmo04g01310 623 SMART rav1_2 350 412 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 SMART rav1_2 136 198 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 SUPERFAMILY DNA-binding domain 135 194 IPR016177 GO:0003677
Cmo04g01310 623 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 Pfam AP2 domain 350 398 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700|GO:0006355
Cmo04g01310 623 Gene3D AP2/ERF domain 349 408 IPR036955 GO:0003700|GO:0006355
Cmo04g01310 623 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 209 - -
Cmo04g01310 623 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 217 604 - -
Cmo04g01310 623 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 MobiDBLite consensus disorder prediction 568 591 - -
Cmo04g01310 623 CDD AP2 136 194 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 MobiDBLite consensus disorder prediction 312 351 - -
Cmo04g01310 623 Coils Coil 193 213 - -
Cmo04g01310 623 CDD AP2 350 408 IPR001471 GO:0003700|GO:0006355
Cmo04g01310 623 MobiDBLite consensus disorder prediction 98 137 - -
Cmo04g01310 623 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 209 - -
Cmo04g01310 623 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 217 604 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01310 Cmo-Chr4:6668332 Cmo03g00985 Cmo-Chr3:7417465 1.42E-10 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo04g01310 Cmo-Chr4:6668332 1.11E-35 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo04g01310 Cmo-Chr4:6668332 5.08E-41 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo04g01310 Cmo-Chr4:6668332 1.20E-37 wgd
Cmo04g00269 Cmo-Chr4:1358706 Cmo04g01310 Cmo-Chr4:6668332 1.62E-79 wgd
Cmo04g01310 Cmo-Chr4:6668332 Cmo06g00342 Cmo-Chr6:1658640 8.26E-43 wgd
Cmo04g01310 Cmo-Chr4:6668332 Cmo07g00986 Cmo-Chr7:4842641 3.31E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9606 PF00847 AP2 9.70E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01310 K09284 - csv:101204131 558.14