Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01310 | ATGATGATGTTGAATCTTAATGATTCGATTATGAACCGTGACGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCTGCGGCGTTGGCGGCGGTCCAGTGCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCTGGTGGGTGGGGAGATTCTGGGTCTCCGATACTCAGGACCCAGTGGCTGAACCTGTCGCCGACGGCGGATTCTGGTGGCGGTGGAGGACAGCCAGAGCTGAAAACTGTGCAGCCGAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCTGCTATCAAATTTAGGGGAGTCGATGCAGATATAAACTTCAATATAAGTGACTACGACGAAGATATGAAACAAAACAATCTGAAAGAGGAGGAGGAGGAAGAAGAAGAAATGATGATGTTGAATCTTAATGATTCGATTATGAACCGTGACGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCTGCGGCGTTGGCGGCGGTCCAGTGCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCTGGTGGGTGGGGAGATTCTGGGTCTCCGATACTCAGGACCCAGTGGCTGAACCTGTCGCCGACGGCGGATTCTGGTGGCGGTGGAGGACAGCCAGAGCTGAAAACTGTGCAGCCGAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCTGCTATCAAATTTAGGGGAGTCGATGCAGATATAAACTTCAATATAAGTGACTACGACGAAGATATGAAACAAACAAAAAATCTAAACAAAGAAGAATTTGTGCATGTTCTACGTCGACAAAGTTCTGGAGTTTCTCGTGGAGGATCAAAGCTAAGAGGACTATCTGTTCAAAGATATGGACGATGGGAAACTCAAATGAATCAAATTATTGGAAAGAAGGGAACTGAGGAAAGGTCCGAGACGACGGTGGAAGCAAGTAATGGAGGCAATGGACATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTTCTCCAAAGCTCAACATTGAGAGACCAAAGAATGAAAACAATGGATATGCACATGGAATGGGTGGACAACAACCTAATACTCCTCCTTCCGTGTTCTCTGGTTTTTACTCTGCTTTTTTACCACGTAATCAGGAAAGAGGGAGAGAGACGATAAACAAGGAGTCGACGGGTTGGAGATGGCAAACGGCGAGGTCGATAGAAGGAAATGTGAACGAAGAAAAGAAGAAGACTATAGAAAGCCATGGTTCCAAGAGTGCAGCATCATCAGGATTCTCTCCCTCTCATAATTTTGGTTCATTTTATGCCCAAAACAACACACCTCTCCACACCAATCACTGCCTTCCAACGCCTTACACCAATATTTCTTGA | 1872 | 47.92 | MMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPCGVGGGPVPELVTQALFPVAGGWGDSGSPILRTQWLNLSPTADSGGGGGQPELKTVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQNNLKEEEEEEEEMMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPCGVGGGPVPELVTQALFPVAGGWGDSGSPILRTQWLNLSPTADSGGGGGQPELKTVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQTKNLNKEEFVHVLRRQSSGVSRGGSKLRGLSVQRYGRWETQMNQIIGKKGTEERSETTVEASNGGNGHNLDLSIGGIFNYHFSNSSPKLNIERPKNENNGYAHGMGGQQPNTPPSVFSGFYSAFLPRNQERGRETINKESTGWRWQTARSIEGNVNEEKKKTIESHGSKSAASSGFSPSHNFGSFYAQNNTPLHTNHCLPTPYTNIS | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6668332 | 6672147 | + | CmoCh04G013100.1 | Cmo04g01310 | 380285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01310 | 623 | ProSiteProfiles | AP2/ERF domain profile. | 350 | 406 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | SUPERFAMILY | DNA-binding domain | 349 | 408 | IPR016177 | GO:0003677 | |
Cmo04g01310 | 623 | SMART | rav1_2 | 350 | 412 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | SMART | rav1_2 | 136 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | SUPERFAMILY | DNA-binding domain | 135 | 194 | IPR016177 | GO:0003677 | |
Cmo04g01310 | 623 | Pfam | AP2 domain | 136 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | Pfam | AP2 domain | 350 | 398 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | Gene3D | AP2/ERF domain | 135 | 194 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | Gene3D | AP2/ERF domain | 349 | 408 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 3 | 209 | - | - | |
Cmo04g01310 | 623 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 217 | 604 | - | - | |
Cmo04g01310 | 623 | ProSiteProfiles | AP2/ERF domain profile. | 136 | 192 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | MobiDBLite | consensus disorder prediction | 568 | 591 | - | - | |
Cmo04g01310 | 623 | CDD | AP2 | 136 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | MobiDBLite | consensus disorder prediction | 312 | 351 | - | - | |
Cmo04g01310 | 623 | Coils | Coil | 193 | 213 | - | - | |
Cmo04g01310 | 623 | CDD | AP2 | 350 | 408 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo04g01310 | 623 | MobiDBLite | consensus disorder prediction | 98 | 137 | - | - | |
Cmo04g01310 | 623 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 3 | 209 | - | - | |
Cmo04g01310 | 623 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 217 | 604 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01310 | Cmo-Chr4:6668332 | Cmo03g00985 | Cmo-Chr3:7417465 | 1.42E-10 | dispersed | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo04g01310 | Cmo-Chr4:6668332 | 1.11E-35 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo04g01310 | Cmo-Chr4:6668332 | 5.08E-41 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo04g01310 | Cmo-Chr4:6668332 | 1.20E-37 | wgd | |
Cmo04g00269 | Cmo-Chr4:1358706 | Cmo04g01310 | Cmo-Chr4:6668332 | 1.62E-79 | wgd | |
Cmo04g01310 | Cmo-Chr4:6668332 | Cmo06g00342 | Cmo-Chr6:1658640 | 8.26E-43 | wgd | |
Cmo04g01310 | Cmo-Chr4:6668332 | Cmo07g00986 | Cmo-Chr7:4842641 | 3.31E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9606 | PF00847 | AP2 | 9.70E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01310 | K09284 | - | csv:101204131 | 558.14 |