Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01312 ATGACAAGCTTCCGATTCTTGTTCAGCAATGGCGTCCTTTTGCAAGGCTCCGAAGTTCCTCCTGTCGCCACCTTCCTTGAAACTCATCCTGGCGCTTATACCACTACTCGGACCCATAACAATGCGTCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGACTCAATCGGTAAAAATTCTATCAAATTCGACTCCTCAACTCTTGTCTGAATCGAACAGAACAGTCAATAAACTGGTAATACCGTCGCCGATTGATTCTATTCCTTGGGAACCAGCTATTCGAACGCTTGTCGATGATTCAATGAGAAAAGTGTTACCGATAGCATTAAATGATAGAAATGGGGAAGAAGAATTGGCAGTTACAGTGCTTGTAAGTGTGGATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGAGTTAAAGAGGCTGTTGGTGTGCACACGCATGTTGGTAATTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCAAATCTGGCCGTCGTGGGTCGAGGAAGAGATGCTGCTGCGGCAAAGTACTCGGATTGGGTTAGGCGTAGGAAGCCTCTGGAAAAATTGAGGCCTCCTTCTGTGACTGAGCTTTTGTTGTCAAACGATGGTGATCAGATACTTGAAGGCTGCCTGACTAACTTTTTTGTTGTTTGCCGGAAGAATAATAATGAAGCTAAAGGAACAAGCCTCCTTGATTCTGCAAGTACACATTCCTTTGAACTGCAGACAGCTCCCATTAGCGACGGCGTTCTGACTGGAGTTATTCGTCAATTAGTCGTTGAAGCTTGTTTAAGCATCGGCATTCCATTTCGAGAAGTTGCACCTACTTGGTCAAGCAATGACATGTGGGAAGAAGCGTTTGTTACAAATAGCTTGAGAGTCATGGAGCACGTGAATACTATTTGCATGCCTAACATATGGGACTTACTCGAGTCGAAAACATGGCGTGAGATATCATGGAACAAAAAGTCGTTTAAGGATGCTCCTGGAATCATCACAAGCACAATCCAGAAAGAGATAATGAAGAAAGTTGTTGAGGAAGCATTCCCGATTGGTTACTACCGCGCCAAATACAAAATTATCTTCTTTCACTCACCTCTGTCAGGTACCATTCTCTCTCAATTCTCTTCCATGCCAGACTTAGGGTTACACGATCTTGCTGATATGGCGGAGCCTCCCACCAGTCCGCCCGGTGGCAGTCACGAGAGCGGCGGCGAGCAGAGCCCTATCACTGGTGGTGCTCGCGAACAGGACCGATTTCTTCCGATCGCTAACATTAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCTAAAGACGCTAAGGATACTGTCCAGGAATGCGTCTCCGAGTTCATTAGCTTCGTCACTAGCGAGGCGAGTGACAAGTGCCAGAAGGAAAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAGTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATGCAGTTGGGGCCATGCCTGGTCAAAATTCCCAGCAATACATGCAGTCGGGAGCGTTGACTTACATTAACACCCAAGGACAGCATTTGATCATTCCTTCAATGCAGAATAATGAATAG 1713 45.83 MTSFRFLFSNGVLLQGSEVPPVATFLETHPGAYTTTRTHNNASSILFWDRHMKRLTQSVKILSNSTPQLLSESNRTVNKLVIPSPIDSIPWEPAIRTLVDDSMRKVLPIALNDRNGEEELAVTVLVSVDLENLGESDGVVDVERVKEAVGVHTHVGNYVPREFGVPENGANLAVVGRGRDAAAAKYSDWVRRRKPLEKLRPPSVTELLLSNDGDQILEGCLTNFFVVCRKNNNEAKGTSLLDSASTHSFELQTAPISDGVLTGVIRQLVVEACLSIGIPFREVAPTWSSNDMWEEAFVTNSLRVMEHVNTICMPNIWDLLESKTWREISWNKKSFKDAPGIITSTIQKEIMKKVVEEAFPIGYYRAKYKIIFFHSPLSGTILSQFSSMPDLGLHDLADMAEPPTSPPGGSHESGGEQSPITGGAREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6677894 6687233 + CmoCh04G013120.1 Cmo04g01312 380287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01312 570 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 430 494 IPR003958 -
Cmo04g01312 570 Gene3D Histone, subunit A 421 552 IPR009072 GO:0046982
Cmo04g01312 570 MobiDBLite consensus disorder prediction 396 423 - -
Cmo04g01312 570 Pfam Amino-transferase class IV 31 306 IPR001544 GO:0003824
Cmo04g01312 570 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 357 - -
Cmo04g01312 570 SUPERFAMILY Histone-fold 427 527 IPR009072 GO:0046982
Cmo04g01312 570 ProSitePatterns NF-YB/HAP3 subunit signature. 461 477 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo04g01312 570 PRINTS CCAAT-binding transcription factor subunit A signature 458 476 - -
Cmo04g01312 570 PRINTS CCAAT-binding transcription factor subunit A signature 477 495 - -
Cmo04g01312 570 PRINTS CCAAT-binding transcription factor subunit A signature 496 514 - -
Cmo04g01312 570 Gene3D - 169 365 IPR043132 -
Cmo04g01312 570 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 19 311 IPR036038 GO:0003824
Cmo04g01312 570 MobiDBLite consensus disorder prediction 518 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01312 Cmo-Chr4:6677894 Cmo20g00682 Cmo-Chr20:3345325 1.98E-48 dispersed
Cmo10g00278 Cmo-Chr10:1237091 Cmo04g01312 Cmo-Chr4:6677894 5.33E-19 dispersed
Cmo11g00257 Cmo-Chr11:1261699 Cmo04g01312 Cmo-Chr4:6677894 3.06E-18 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo04g01312 Cmo-Chr4:6677894 1.59E-75 wgd
Cmo04g00271 Cmo-Chr4:1368977 Cmo04g01312 Cmo-Chr4:6677894 7.75E-106 wgd
Cmo04g01312 Cmo-Chr4:6677894 Cmo06g00346 Cmo-Chr6:1673581 2.06E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9607 PF01063 Aminotran_4 4.70E-15 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01312 - - cmax:111493655 694.886