Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01315 | ATGGANTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA | 627 | 56.78 | MXYLAKCTNAPSTPITVPNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6708105 | 6709152 | + | CmoCh04G013150.1 | Cmo04g01315 | 380290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01315 | 208 | Pfam | Lateral organ boundaries (LOB) domain | 57 | 154 | IPR004883 | - | |
Cmo04g01315 | 208 | Coils | Coil | 136 | 170 | - | - | |
Cmo04g01315 | 208 | ProSiteProfiles | LOB domain profile. | 56 | 157 | IPR004883 | - | |
Cmo04g01315 | 208 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 40 | 190 | - | - | |
Cmo04g01315 | 208 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 40 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01315 | Cmo-Chr4:6708105 | Cmo13g00196 | Cmo-Chr13:1406230 | 2.46E-71 | dispersed | |
Cmo01g00564 | Cmo-Chr1:2827611 | Cmo04g01315 | Cmo-Chr4:6708105 | 5.43E-72 | wgd | |
Cmo15g00444 | Cmo-Chr15:2017329 | Cmo04g01315 | Cmo-Chr4:6708105 | 9.29E-57 | wgd | |
Cmo02g00870 | Cmo-Chr2:5297039 | Cmo04g01315 | Cmo-Chr4:6708105 | 2.04E-73 | wgd | |
Cmo20g00502 | Cmo-Chr20:2396456 | Cmo04g01315 | Cmo-Chr4:6708105 | 6.65E-77 | wgd | |
Cmo04g00277 | Cmo-Chr4:1399587 | Cmo04g01315 | Cmo-Chr4:6708105 | 8.17E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9608 | PF03195 | LOB | 6.00E-40 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01315 | - | - | bhj:120081845 | 357.836 |