Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01315 ATGGANTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA 627 56.78 MXYLAKCTNAPSTPITVPNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6708105 6709152 + CmoCh04G013150.1 Cmo04g01315 380290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01315 208 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Cmo04g01315 208 Coils Coil 136 170 - -
Cmo04g01315 208 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Cmo04g01315 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 40 190 - -
Cmo04g01315 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01315 Cmo-Chr4:6708105 Cmo13g00196 Cmo-Chr13:1406230 2.46E-71 dispersed
Cmo01g00564 Cmo-Chr1:2827611 Cmo04g01315 Cmo-Chr4:6708105 5.43E-72 wgd
Cmo15g00444 Cmo-Chr15:2017329 Cmo04g01315 Cmo-Chr4:6708105 9.29E-57 wgd
Cmo02g00870 Cmo-Chr2:5297039 Cmo04g01315 Cmo-Chr4:6708105 2.04E-73 wgd
Cmo20g00502 Cmo-Chr20:2396456 Cmo04g01315 Cmo-Chr4:6708105 6.65E-77 wgd
Cmo04g00277 Cmo-Chr4:1399587 Cmo04g01315 Cmo-Chr4:6708105 8.17E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9608 PF03195 LOB 6.00E-40 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01315 - - bhj:120081845 357.836