Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g01331 | ATGGTTGGTAATTTGATTACACGGCAAAGAAAGAGAGTAGTAACCTTTCTTTCTCGCCATATACGTATATGCTCTGTAGATTCCCAAGGACGGCCCGCTTACCAGAGCGGCGCTGCTCGCTCCCATACATTAAAACACCCACTCCTGCATCTCATCAACATTTCTTTTAGTAGGGATGAGAATTTGGGAGATGCATCAACATGCGAAGCAGGGGGGCCGGATCCACTGCGCAGTCATCCATTGCTACCTCCTTCTAACCCTTCTTCTGTCATTTCCTCTCCTGCTTCAATCTCTGAACAAAGCACTGAAGTCTGCATCTTCTTCTTCATGTCGAATTCCGATTCTGGCAACACCAATGGGGTCTCCAATGGCGCCGCCGTTGATACCCACAAAAACCAGCCTTCTTCAAATGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTCGATGGTCGTGGCCGCCGCATCCGTATGCCCATCATATGCGCCGCTCGAGTATTCCAGTTGACTCGAGAGCTTGGTCATAAGTCCGATGGCCAGACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCCTCCATTATTGCCGCTACTGGCACCGGCACTACCCCGGCTAATTTCTCCTCCGTCTCTCTTTCCGTCAGAGGAAATGGCGGCTCTACTTCTCTCTCTTCCCCTTCTTCCACCACTTCAACTCTCTCCCTCTCTCGTCCCCAGGCTCTCTCGGGCCCCACGCCGTTTATTCTCGGCAAGCGCGTCCGGTCCGATGACGACGGCGGTAAGGACGATGGGGCGGGAGTGGGTCCGACTGGGCCAGGTGGGTACTGGGCGATTCCAGCAAGACCCGATTATGGGCAGGTGTGGAGTTTTGCCGCCGCGGCTCCCTCGGAAATGGTGGTTCAACCCGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCCCAACCGCAGCAGCCGATTAGAGAAGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCAGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGCGGTGGTTCTGGCCGACGGGAAGATGACCCTCGCTGA | 1080 | 55.56 | MVGNLITRQRKRVVTFLSRHIRICSVDSQGRPAYQSGAARSHTLKHPLLHLINISFSRDENLGDASTCEAGGPDPLRSHPLLPPSNPSSVISSPASISEQSTEVCIFFFMSNSDSGNTNGVSNGAAVDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSTSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGGKDDGAGVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQPQQPIREASAARVGNYLPSHLNLLASLSGGGGSGRREDDPR | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6776828 | 6780093 | + | CmoCh04G013310.1 | Cmo04g01331 | 380306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g01331 | 359 | MobiDBLite | consensus disorder prediction | 219 | 245 | - | - | |
| Cmo04g01331 | 359 | PANTHER | TRANSCRIPTION FACTOR TCP FAMILY-RELATED | 110 | 356 | - | - | |
| Cmo04g01331 | 359 | Pfam | TCP family transcription factor | 147 | 232 | IPR017887 | - | |
| Cmo04g01331 | 359 | MobiDBLite | consensus disorder prediction | 219 | 278 | - | - | |
| Cmo04g01331 | 359 | MobiDBLite | consensus disorder prediction | 144 | 159 | - | - | |
| Cmo04g01331 | 359 | MobiDBLite | consensus disorder prediction | 120 | 140 | - | - | |
| Cmo04g01331 | 359 | MobiDBLite | consensus disorder prediction | 120 | 159 | - | - | |
| Cmo04g01331 | 359 | ProSiteProfiles | TCP domain profile. | 147 | 201 | IPR017887 | - | |
| Cmo04g01331 | 359 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 110 | 356 | IPR005333 | GO:0003700 | |
| Cmo04g01331 | 359 | MobiDBLite | consensus disorder prediction | 64 | 94 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01331 | Cmo-Chr4:6776828 | Cmo15g00816 | Cmo-Chr15:4063640 | 1.08E-86 | dispersed | |
| Cmo18g00812 | Cmo-Chr18:9545980 | Cmo04g01331 | Cmo-Chr4:6776828 | 2.27E-110 | wgd | |
| Cmo04g01331 | Cmo-Chr4:6776828 | Cmo04g02347 | Cmo-Chr4:17436112 | 4.53E-96 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9609 | PF03634 | TCP | 7.80E-33 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g01331 | K16221 | - | csv:101206050 | 384.8 |