Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01331 ATGGTTGGTAATTTGATTACACGGCAAAGAAAGAGAGTAGTAACCTTTCTTTCTCGCCATATACGTATATGCTCTGTAGATTCCCAAGGACGGCCCGCTTACCAGAGCGGCGCTGCTCGCTCCCATACATTAAAACACCCACTCCTGCATCTCATCAACATTTCTTTTAGTAGGGATGAGAATTTGGGAGATGCATCAACATGCGAAGCAGGGGGGCCGGATCCACTGCGCAGTCATCCATTGCTACCTCCTTCTAACCCTTCTTCTGTCATTTCCTCTCCTGCTTCAATCTCTGAACAAAGCACTGAAGTCTGCATCTTCTTCTTCATGTCGAATTCCGATTCTGGCAACACCAATGGGGTCTCCAATGGCGCCGCCGTTGATACCCACAAAAACCAGCCTTCTTCAAATGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTCGATGGTCGTGGCCGCCGCATCCGTATGCCCATCATATGCGCCGCTCGAGTATTCCAGTTGACTCGAGAGCTTGGTCATAAGTCCGATGGCCAGACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCCTCCATTATTGCCGCTACTGGCACCGGCACTACCCCGGCTAATTTCTCCTCCGTCTCTCTTTCCGTCAGAGGAAATGGCGGCTCTACTTCTCTCTCTTCCCCTTCTTCCACCACTTCAACTCTCTCCCTCTCTCGTCCCCAGGCTCTCTCGGGCCCCACGCCGTTTATTCTCGGCAAGCGCGTCCGGTCCGATGACGACGGCGGTAAGGACGATGGGGCGGGAGTGGGTCCGACTGGGCCAGGTGGGTACTGGGCGATTCCAGCAAGACCCGATTATGGGCAGGTGTGGAGTTTTGCCGCCGCGGCTCCCTCGGAAATGGTGGTTCAACCCGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCCCAACCGCAGCAGCCGATTAGAGAAGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCAGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGCGGTGGTTCTGGCCGACGGGAAGATGACCCTCGCTGA 1080 55.56 MVGNLITRQRKRVVTFLSRHIRICSVDSQGRPAYQSGAARSHTLKHPLLHLINISFSRDENLGDASTCEAGGPDPLRSHPLLPPSNPSSVISSPASISEQSTEVCIFFFMSNSDSGNTNGVSNGAAVDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSTSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGGKDDGAGVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQPQQPIREASAARVGNYLPSHLNLLASLSGGGGSGRREDDPR 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6776828 6780093 + CmoCh04G013310.1 Cmo04g01331 380306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01331 359 MobiDBLite consensus disorder prediction 219 245 - -
Cmo04g01331 359 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 110 356 - -
Cmo04g01331 359 Pfam TCP family transcription factor 147 232 IPR017887 -
Cmo04g01331 359 MobiDBLite consensus disorder prediction 219 278 - -
Cmo04g01331 359 MobiDBLite consensus disorder prediction 144 159 - -
Cmo04g01331 359 MobiDBLite consensus disorder prediction 120 140 - -
Cmo04g01331 359 MobiDBLite consensus disorder prediction 120 159 - -
Cmo04g01331 359 ProSiteProfiles TCP domain profile. 147 201 IPR017887 -
Cmo04g01331 359 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 110 356 IPR005333 GO:0003700
Cmo04g01331 359 MobiDBLite consensus disorder prediction 64 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01331 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01331 Cmo-Chr4:6776828 Cmo15g00816 Cmo-Chr15:4063640 1.08E-86 dispersed
Cmo18g00812 Cmo-Chr18:9545980 Cmo04g01331 Cmo-Chr4:6776828 2.27E-110 wgd
Cmo04g01331 Cmo-Chr4:6776828 Cmo04g02347 Cmo-Chr4:17436112 4.53E-96 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00816 . 31 253 TCP Transcription Factor Family AT5G23280 62.2 1.3e-64 243.8
Cmo04g02347 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 3.0e-64 242.7
Cmo04g01331 . 145 359 TCP Transcription Factor Family AT5G23280 61.4 1.1e-63 240.7
Cmo18g00812 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 1.2e-57 220.7
Cmo17g00006 . 65 341 TCP Transcription Factor Family AT2G45680 50.5 5.0e-57 219.2
Cmo18g01183 CST 56 146 TCP Transcription Factor Family AT3G47620 92.3 5.3e-41 166.4
Cmo04g01729 CST 59 153 TCP Transcription Factor Family AT3G47620 88.7 5.8e-40 162.9
Cmo13g01176 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.8e-39 160.2
Cmo04g01953 . 130 212 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cmo04g01953 . 130 222 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cmo14g00744 . 1 313 TCP Transcription Factor Family AT3G27010 55.3 1.7e-61 233.8
Cmo11g01602 . 29 272 TCP Transcription Factor Family AT3G27010 55.5 4.5e-54 209.1
Cmo17g01372 . 269 486 TCP Transcription Factor Family AT3G27010 53.2 6.4e-48 188.7
Cmo15g00816 . 1 252 TCP Transcription Factor Family AT5G08330 60.2 9.7e-65 244.2
Cmo04g02347 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 9.1e-63 237.7
Cmo04g01331 . 117 357 TCP Transcription Factor Family AT5G08330 55.2 1.5e-60 230.3
Cmo18g00812 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 2.3e-58 223.0
Cmo11g00214 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 56.7 2.3e-38 157.1
Cmo14g01189 . 28 139 TCP Transcription Factor Family AT3G02150 66.4 2.6e-37 153.7
Cmo11g02005 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9609 PF03634 TCP 7.80E-33 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01331 Cmo_Chr04 FPKM 8.762458 8.472094 2.513122 3.098954 7.860824 8.118172 9.730163 2.149893 2.517677 2.768006