Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01333 ATGTCTCGGAAATCCCAGGTGATGCCTTCATTGCAAGCTACGAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCGCGAACTGCTGAAACTTTGGAAGAGCCGTACAAGCAGAATGTGAAAAACATGGAAGGTAGATCGATAGTTGATGGCGAAAATGGTGTTGCCAGAGATGATGGCGTCAATCGACTTCAATACAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATATAGTTACAATATTACATTAGTGGAAGAAAGACCCATCGTGGATGATGGAGAAGATGGTTTTATGCCTTTTCCTTCACCTTCAATGTCGGCTTCACAGAGTGAACGCAGGTGGGGTGATACATCCTCCTACACGCCAAGGAAGATACTCAAGTCTTGGTTTAAACTTCCAAATGGAAATTGGGATCTTGTAAAGATACTGTCAACGGCGGGAACAGAGTCAGTTGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAGATTTGATTCCTGCAAATCCGGATATCCTTGATGGCGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGACCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAATGATTACATTGAAGCATATAAACGCAAAACAATTGAGAGCCCACACGTATACGCCATTACGGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCGGCCCTTGGCGGTGGAAGTGGAATAGAATACGAGATATTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTTGGAAAATTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCCGGTGCAAATATTCAAACTTGTAAGCTTTCCTGTAATTTGGACTCTGCATTGGTTTTCAATTCCAGAGTTGTCCAATGCACAGAGGGAGAGAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCGCCTGCACTTAAAGAGAGGCTAAACTTGAGAAGAGCGGAAGAGTACAAATACCTCAGCCAGAGCAGTTGTATTTCAATAAGTAGAGTAAATGATGCGGAGGAGTTTCGTGTAGTCATGGAAGCACTAGATGTCGTACATATTAGTAAAGAAGACCAGCACAGTGTATTTGCAATGCTTGCTGCTGTTCTTTGGCTGGGAAATGTTTCCTTTAGTGTGATAGACAATGAAAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTCGCTAAACTTATTGGGTGCGAGATTGAGGAGCTTAAACTAGCTCTATCAACTCGAAAAATGAGAATAGGGAACGACAGCATTGTCCAAAAGCTTACTTTATCTCAGGCAATTGACACTAGAGATGCTTTGGCAAAGTCAATTTACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGGCGCACTGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGTATTAACTATGCAAATGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTGGAGCAGGAGGAATATATCCAAGATGGAATCGACTGGGCAAAAGTTGATTTCGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCTACTTTTCCAAATGGCACAGATGTGACCTTTGCGAACAAGCTTAAGCAGCATTTGGCACCCAATCCTTCTTTTAGAGGAGAACGAGAGAAAGCCTTCACTGTCTGTCATTATGCAGGAGAGGTCACTTATGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCCATACAACTCCTATCCTCATGTTCATGTCATCTTCCTCAAATTTTTGCATCCAACATGCTAACTCAATCGGGAAAGTCCATAGGTGGCCCTTTACATAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGCGTCGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCACCGTCTTGAAAATACAACGCCCCATTTCATCCGTTGCATCAAGCCCAACAATGTTCAGTCTCCCAGATTGTCGGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCCACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTTCTTCTGCAAGAAAGCATTGCATCGCAGGATCCACTAAGTGTCTCAGTTGCGATTCTTCATCAATTCAATATATTGCCGGAAATGTACCAAGTTGGCTATACAAAATTGTTCTTCCGAACTGGACAGATTGGAATGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTCTGTGTTCAAAGCTGTTATAGAGGGCACCTAGCTCGTCGCCATCTCAAAGAGCTGAAGAAAGGGATTTTCGTACTTCAGTCATTTGCACGTGGGGAGAAAACCAGAAAAGAATATGCAATCTTGATACGAAGGCATAGGGCTGCTATTTCTATTCAGAAGTGTGTGAAAGCCAGAATTGCTGAAAAACGTTTGAAGAAAGTCTGTGATGCATCACTTCTGATACAATCGGTTATCCGTGGCTGTTTGGTCAGGAGATGCTCAGGAGATATAGGATTAATGAAACCTGGTGGCCTGACGGCAAACGAGTCAGGTGAGGTGCTTGTTAAGGCATCATTCCTTTCAGAATTACAGCGCCGTGTCCTGAAGGCAGAGGCTGCTTTGAGGGAGAAAGAAGAGGAAAACGACATCCTCCACCAGCACCTCCAGCAGTACGAGAATCGTTGGTCAGAGTATGAGCTGAAAATGAAATCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGATGCATCAGTCAATGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAACTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGTGTCATTAGCCGCTTGGCCGAAGAATTCGAACAAAGAAGTCAAGTCTTCAGCGACGATGCCAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTCGAGGCAAGTCTTGATCCAGATAGGGAACTAAGAAGGTTGAAGCAGATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACAAAAGTGATTTTGAATAAGCTTGGGAATGAAGGTGCCATGGATAGAGTGAAAAAGAAATGGTGGGGAAGGAGAAACAGCACAAGGAAGAAAGGGTATTCCGTTGTGCTGCTAATACCTATTTACACTGTTCTTAGCAACCCTATAGTTGTTGCAAAGGAGGAACTGCTGCAAGAGTTCTGTTCTAACTTTTCCATTACAAGTTTCTTTTTGGAGGGCTTCAAGTGA 3687 41.88 MSRKSQVMPSLQATKSMPVNSRFMIPRTAETLEEPYKQNVKNMEGRSIVDGENGVARDDGVNRLQYSMNNIDELNEDSPYSYNITLVEERPIVDDGEDGFMPFPSPSMSASQSERRWGDTSSYTPRKILKSWFKLPNGNWDLVKILSTAGTESVVSLTDGKVLKVKAEDLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEAYKRKTIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKLSCNLDSALVFNSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSSCISISRVNDAEEFRVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIGCEIEELKLALSTRKMRIGNDSIVQKLTLSQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDVTFANKLKQHLAPNPSFRGEREKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSGKSIGGPLHKSGGAESQKLSVARKFKGQLFQLMHRLENTTPHFIRCIKPNNVQSPRLSEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGMLEDTRNRTLHGILCVQSCYRGHLARRHLKELKKGIFVLQSFARGEKTRKEYAILIRRHRAAISIQKCVKARIAEKRLKKVCDASLLIQSVIRGCLVRRCSGDIGLMKPGGLTANESGEVLVKASFLSELQRRVLKAEAALREKEEENDILHQHLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTTNESNGVRPMNAGLSVISRLAEEFEQRSQVFSDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTRKKGYSVVLLIPIYTVLSNPIVVAKEELLQEFCSNFSITSFFLEGFK 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6791952 6805347 + CmoCh04G013330.1 Cmo04g01333 380308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01333 1228 ProSiteProfiles Myosin motor domain profile. 179 860 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 ProSiteProfiles IQ motif profile. 885 914 IPR000048 GO:0005515
Cmo04g01333 1228 Pfam Myosin head (motor domain) 181 848 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 Gene3D - 558 750 - -
Cmo04g01333 1228 Gene3D - 865 912 - -
Cmo04g01333 1228 Gene3D - 913 954 - -
Cmo04g01333 1228 SMART MYSc_2a 173 861 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 Gene3D - 370 426 - -
Cmo04g01333 1228 Gene3D Myosin VI head, motor domain, U50 subdomain 427 535 - -
Cmo04g01333 1228 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 908 IPR027417 -
Cmo04g01333 1228 Coils Coil 980 1028 - -
Cmo04g01333 1228 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 PRINTS Myosin heavy chain signature 546 574 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 PRINTS Myosin heavy chain signature 599 627 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo04g01333 1228 ProSiteProfiles IQ motif profile. 864 889 IPR000048 GO:0005515
Cmo04g01333 1228 MobiDBLite consensus disorder prediction 1051 1084 - -
Cmo04g01333 1228 PANTHER MYOSIN 104 1182 - -
Cmo04g01333 1228 Gene3D - 794 861 - -
Cmo04g01333 1228 SMART iq_5 910 932 IPR000048 GO:0005515
Cmo04g01333 1228 SMART iq_5 933 955 IPR000048 GO:0005515
Cmo04g01333 1228 SMART iq_5 884 906 IPR000048 GO:0005515
Cmo04g01333 1228 SMART iq_5 861 883 IPR000048 GO:0005515
Cmo04g01333 1228 CDD MYSc_Myo8 193 848 IPR036022 -
Cmo04g01333 1228 Gene3D Kinesin motor domain 178 793 IPR036961 -
Cmo04g01333 1228 Pfam IQ calmodulin-binding motif 866 883 IPR000048 GO:0005515
Cmo04g01333 1228 Pfam IQ calmodulin-binding motif 937 952 IPR000048 GO:0005515
Cmo04g01333 1228 MobiDBLite consensus disorder prediction 1068 1084 - -
Cmo04g01333 1228 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 104 1182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01236 Cmo-Chr1:9898036 Cmo04g01333 Cmo-Chr4:6791952 0 dispersed
Cmo04g01333 Cmo-Chr4:6791952 Cmo09g00885 Cmo-Chr9:4595995 0 dispersed
Cmo18g00813 Cmo-Chr18:9552702 Cmo04g01333 Cmo-Chr4:6791952 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01333 - K10357 csv:101222101 2127.83