Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01369 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGACCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAAAGGAGGAAACCCCTTGCTGATGAAAGCAATGACATTGATGAGATGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCACTGGTAGAGGAAGAGGAAGGGGGCGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTCGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACAAGAACCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGTAGGCAAAGACAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCTAGCAAAGACTCGAAGACTGCGCCAGCAGCAAAGTCAGATGTACCTGTAGAACCAGCTGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAAGTAAACAGCTTTGTATACTAA 864 46.18 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDEMKKSKTHDMSHGSTGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNKNPNQDVHMEPHIEPSETPKEVGKDNQTIQNIDLNADVNASKDSKTAPAAKSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEEVNSFVY 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6971421 6977985 + CmoCh04G013690.1 Cmo04g01369 380344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01369 287 PANTHER HISTONE SUPERFAMILY PROTEIN 1 280 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 90 132 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 159 177 - -
Cmo04g01369 287 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cmo04g01369 287 Coils Coil 263 283 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 272 287 - -
Cmo04g01369 287 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 280 - -
Cmo04g01369 287 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Cmo04g01369 287 MobiDBLite consensus disorder prediction 90 246 - -
Cmo04g01369 287 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Cmo04g01369 287 MobiDBLite consensus disorder prediction 178 192 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 193 217 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 267 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01369 Cmo-Chr4:6971421 Cmo19g00313 Cmo-Chr19:2356529 5.00E-12 dispersed
Cmo05g00443 Cmo-Chr5:2064082 Cmo04g01369 Cmo-Chr4:6971421 1.25E-11 transposed
Cmo20g00152 Cmo-Chr20:748344 Cmo04g01369 Cmo-Chr4:6971421 3.16E-70 transposed
Cmo18g00833 Cmo-Chr18:9713410 Cmo04g01369 Cmo-Chr4:6971421 1.14E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9615 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01369 K21752 - csv:101209714 468.774