Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01369 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGACCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAAAGGAGGAAACCCCTTGCTGATGAAAGCAATGACATTGATGAGATGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCACTGGTAGAGGAAGAGGAAGGGGGCGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTCGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACAAGAACCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGTAGGCAAAGACAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCTAGCAAAGACTCGAAGACTGCGCCAGCAGCAAAGTCAGATGTACCTGTAGAACCAGCTGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAAGTAAACAGCTTTGTATACTAA 864 46.18 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDEMKKSKTHDMSHGSTGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNKNPNQDVHMEPHIEPSETPKEVGKDNQTIQNIDLNADVNASKDSKTAPAAKSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEEVNSFVY 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6971421 6977985 + CmoCh04G013690.1 Cmo04g01369 380344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01369 287 PANTHER HISTONE SUPERFAMILY PROTEIN 1 280 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 90 132 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 159 177 - -
Cmo04g01369 287 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cmo04g01369 287 Coils Coil 263 283 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 272 287 - -
Cmo04g01369 287 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 280 - -
Cmo04g01369 287 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Cmo04g01369 287 MobiDBLite consensus disorder prediction 90 246 - -
Cmo04g01369 287 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Cmo04g01369 287 MobiDBLite consensus disorder prediction 178 192 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 193 217 - -
Cmo04g01369 287 MobiDBLite consensus disorder prediction 267 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01369 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - csv:101209714 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01369 Cmo-Chr4:6971421 Cmo19g00313 Cmo-Chr19:2356529 5.00E-12 dispersed
Cmo05g00443 Cmo-Chr5:2064082 Cmo04g01369 Cmo-Chr4:6971421 1.25E-11 transposed
Cmo20g00152 Cmo-Chr20:748344 Cmo04g01369 Cmo-Chr4:6971421 3.16E-70 transposed
Cmo18g00833 Cmo-Chr18:9713410 Cmo04g01369 Cmo-Chr4:6971421 1.14E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g930 . . . . . . . . . Cmo04g01369 . . . . . . Cpe09g00475 . . . . . . . . . . . . . . . . . . . . Chy10g00706 Cme10g00737 . . . . . . . . . . . . . . . Cpe01g01183 . . . . . . . . . . . . . . . Lsi04g00745 Csa05g02134 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00053 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.4e-87 320.1
Cmo11g00031 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 4.0e-87 318.5
Cmo10g01156 . 74 242 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.5 4.4e-54 208.8
Cmo11g01160 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.3e-53 204.5
Cmo19g00313 . 70 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.4 1.9e-52 203.4
Cmo11g01511 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 9.2e-52 201.1
Cmo10g01156 . 1 242 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.1 7.5e-54 208.0
Cmo11g01160 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.7e-53 206.8
Cmo11g01511 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 2.5e-49 193.0
Cmo19g00313 . 30 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.8 3.2e-49 192.6
Cmo10g00053 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Cmo11g00031 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cmo11g01160 . 61 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 2.2e-60 229.6
Cmo10g01156 . 23 242 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 5.5e-59 224.9
Cmo19g00313 . 30 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.3 1.1e-51 200.7
Cmo11g01511 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 3.3e-51 199.1
Cmo10g00053 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 66.7 5.5e-51 198.4
Cmo11g00031 . 39 197 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.2e-50 197.2
Cmo10g00053 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.9 6.6e-38 154.8
Cmo11g00031 . 39 199 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.0 1.1e-37 154.1
Cmo10g00053 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 6.5e-80 294.7
Cmo11g00031 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 1.1e-79 293.9
Cmo11g01160 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 9.2e-50 194.5
Cmo10g01156 . 74 242 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.9 2.1e-49 193.4
Cmo19g00313 . 70 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 2.7e-49 193.0
Cmo11g01511 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 6.0e-49 191.8
Cmo11g01511 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 1.4e-64 243.4
Cmo19g00313 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 76.9 6.4e-62 234.6
Cmo11g01160 . 82 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 1.1e-50 197.2
Cmo10g01156 . 48 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.0 2.5e-50 196.1
Cmo10g00053 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cmo11g00031 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cmo04g01369 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.8 6.3e-58 221.9
Cmo05g00443 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.5 2.7e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9615 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01369 Cmo_Chr04 FPKM 12.865455 13.350975 4.773595 6.931264 0.0 0.0 0.67611 0.38346 0.0 0.0