Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01369 | ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGACCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAAAGGAGGAAACCCCTTGCTGATGAAAGCAATGACATTGATGAGATGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCACTGGTAGAGGAAGAGGAAGGGGGCGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTCGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACAAGAACCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGTAGGCAAAGACAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCTAGCAAAGACTCGAAGACTGCGCCAGCAGCAAAGTCAGATGTACCTGTAGAACCAGCTGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAAGTAAACAGCTTTGTATACTAA | 864 | 46.18 | MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDEMKKSKTHDMSHGSTGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNKNPNQDVHMEPHIEPSETPKEVGKDNQTIQNIDLNADVNASKDSKTAPAAKSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEEVNSFVY | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6971421 | 6977985 | + | CmoCh04G013690.1 | Cmo04g01369 | 380344 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01369 | 287 | PANTHER | HISTONE SUPERFAMILY PROTEIN | 1 | 280 | - | - | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 90 | 132 | - | - | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 159 | 177 | - | - | |
Cmo04g01369 | 287 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - | |
Cmo04g01369 | 287 | Coils | Coil | 263 | 283 | - | - | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 272 | 287 | - | - | |
Cmo04g01369 | 287 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 280 | - | - | |
Cmo04g01369 | 287 | SUPERFAMILY | Histone-fold | 4 | 89 | IPR009072 | GO:0046982 | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 90 | 246 | - | - | |
Cmo04g01369 | 287 | Gene3D | Histone, subunit A | 1 | 86 | IPR009072 | GO:0046982 | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 178 | 192 | - | - | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 193 | 217 | - | - | |
Cmo04g01369 | 287 | MobiDBLite | consensus disorder prediction | 267 | 287 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01369 | Cmo-Chr4:6971421 | Cmo19g00313 | Cmo-Chr19:2356529 | 5.00E-12 | dispersed | |
Cmo05g00443 | Cmo-Chr5:2064082 | Cmo04g01369 | Cmo-Chr4:6971421 | 1.25E-11 | transposed | |
Cmo20g00152 | Cmo-Chr20:748344 | Cmo04g01369 | Cmo-Chr4:6971421 | 3.16E-70 | transposed | |
Cmo18g00833 | Cmo-Chr18:9713410 | Cmo04g01369 | Cmo-Chr4:6971421 | 1.14E-151 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9615 | PF00808 | CBFD_NFYB_HMF | 2.10E-19 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01369 | K21752 | - | csv:101209714 | 468.774 |