Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01372 ATGGGAAAGCTAAGCTTTAGCTTCCTTGAGAATTCAAAGCCTTACTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAGGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACACGCCTTTGCTACCGCTTCCATTGTTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAACCGAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTCGGCCCGGTAATCGATCAAAATTTCTACTATGCCGGGTTGAAATATACTTCCCCGACGTTCTCTTGTGCCATGAGCAACATGCTACCTGCAATGACATTCGTGATGGCTGTGATCTTCAGGATGGAAAATTTGGAGATGAAGAAACTGAGATGCCAAGCAAAAGTTTTGGGAACCTTAGTGACAGTGGGTGGAGCAATGGTGATGACTTTGTACAAAGGTCCACTTGTTCAAATGCCTTGGTCTAAACATTCTCATCACTCTAATCAAGCCTCTGATGATAAAGCCAACAAAGATTGGTTCAAAGGCTCCATGTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTCTTGCAGAATCAGGCATTGAAGACATACAAGAACCACCAATTCACTCTCACTACACTTGTGTGCTTTGTTGGGACTTTGCAAGCCATAGCTGTGGCATTAGTAGCTGAGCACAAAGCTGTCGTTTGGAGAATTGGTTGGGATATGAACCTCCTCGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGCTAGTGATGAAAAAGAGGGGACCTGTATTTGCAACTGCATTTAGCCCTTTGATGATGATAATCGTGGCCATCATGGGCTCTTTCATCCTCGCTGAAAAGATATTTCTCGGAGGATTAATAGGATCCATCTTCATAGTGTTTGGGCTATATTCAGTTCTTTGGGGAAAGCACAGAGAGAATTTGGAGATCAAAGTCGCTGCTGCCGCTGCTTCTTCTGATGAAGAAATACCACAACCCATCAAGCCTCCTTCTCAACCAAATAATAACAATAATAATATTGCAAATAATTCAATTTTCATTTCCATGCCTGCCCCTGAAAACCCCATCAAACCCAACCAAATCCCAAGAGAATGA 1173 42.88 MGKLSFSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIVPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMENLEMKKLRCQAKVLGTLVTVGGAMVMTLYKGPLVQMPWSKHSHHSNQASDDKANKDWFKGSMFLIIATLAWASLFVLQNQALKTYKNHQFTLTTLVCFVGTLQAIAVALVAEHKAVVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGLIGSIFIVFGLYSVLWGKHRENLEIKVAAAAASSDEEIPQPIKPPSQPNNNNNNIANNSIFISMPAPENPIKPNQIPRE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6992590 6995743 - CmoCh04G013720.1 Cmo04g01372 380347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01372 390 MobiDBLite consensus disorder prediction 347 390 - -
Cmo04g01372 390 MobiDBLite consensus disorder prediction 358 375 - -
Cmo04g01372 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 331 - -
Cmo04g01372 390 PANTHER WAT1-RELATED PROTEIN 9 367 - -
Cmo04g01372 390 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020|GO:0016021
Cmo04g01372 390 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020|GO:0016021
Cmo04g01372 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
Cmo04g01372 390 PANTHER WAT1-RELATED PROTEIN 9 367 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01372 Cmo-Chr4:6992590 Cmo06g00018 Cmo-Chr6:122909 9.30E-155 dispersed
Cmo15g00335 Cmo-Chr15:1548106 Cmo04g01372 Cmo-Chr4:6992590 2.88E-51 dispersed
Cmo18g00829 Cmo-Chr18:9683649 Cmo04g01372 Cmo-Chr4:6992590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01372 - - csv:101206648 624.394