Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01387 ATGTATAGATCCGAGCGATTTCTTGAAGACTGTGACAAGAAATTTCACTCCGTTTCTTTTTTCTCGTTCTTCTTAAGGGCTGTATTCATGGAAAACGTGGAGGAAACGAAGCCATCAGTTACAAACATTTGCCTTCCTGATGGCGTAACAGACACCGCTGAAGTTCAATTTTCAGAAATTTGTGAGAACGGATTACGTCTGGACGAAAATTATTGCAATCAAGCTTTGAAGTTATATAGAGAGACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGGAGTGGAATTCCCGAAGAAGCCAACCGATTTTGGTCCGCCTTTGTTTTGTATTCCGTGAAGAGGCTGACAGATAAGAATTCAGAGAGTTCACATCAGGGATCTGAGAACAACAGCTTCACGTTATGCCACATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTTCCTCAGTTTGTTGTAAAAGCTGGTCCAGTATTAAGTAATCTTTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTTGTTCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTTTATCCTGTCCTACGGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTATTTTTGGCTCTTCGTGTACATTCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAAGTTCGACATTCTTGACTCGGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGTTGAACTGAGGGAAATAATGGATAAAGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCGCGTTCGGCCTCTGAGTGTAATAGTAAAAGCTTGGAGAATATTGACACTGAGGGCTTGATATGCTTTGAAGGATTAATGGAGGAGTTATCTCTTTCATCCAGTTTAGAAAGTCTTGAAAAGGACTATGAAGATGCAATTCATAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCTGCAGGTGCTGTTACAATGAGTGGCTTCAAGAGGAAGTTCGACTCAATTTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCACCGCTTCGCTCTCCTGGTTCACATGCCAATGGCACTCTTAATAGTGGCAACGCAAAACTTGCTGCCACGCCTGTTAGCACAGCCATGACAACGGCAAAGTGGCTCAGAACGGTTATTTCTCCGCTTCCAGCAAAACCTTCAGCGGAGATGGAGCGCTTTTTAGCCTCATGTGATAGAGATGTAACTAATGATGTCGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGCGCTCTTGGAGAGCGTTGTATAGCTGGAAATTTACAAAGTGCGAACCTCATGGATAACATCTGGGCAGAACAGCGGCGACTAGAAGCATTGAAGTTATATTATAGAGTTTTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCGACTCATAAAACTGTTACGATGTTGTTTCCTGCTGTATTGGAGCGAACTGGAATAACCGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTTATTAGACATGAAGAGTCGCTTCCTAGAGAGCTGAGGCGACATCTTAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCGATGTATAACTCCCTGGTTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAACCGTTTGGGTTTACTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAATTTTTCTGGTATTGGGGTATCAACCATGCCTAATTTGCAGAAGCATGAGAGTTTGCCAGGTCAAAATGGGCATATAAGGTCACCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCTTTTACTTCTCCAGTGAAGGACCGACTCCTGGCTTTCAGTAATATCAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCCGGAGGTGGTGGTGAAACGTGCGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACGGATACTCGGTCAAAAAACATCACTATTATTTAATCGTCACATCGACCAGATAATTCTTTGTTGTTTCTATGGTGTCGCGAAGATATCTCAATTGAGCCTCACGTTTAAGGAAATCATATACAACTACAGGAAGCAACCGCAATGCAAACCTCAAATCTTCCGAAATGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATTACGTTCTACAATGAAATATTTATCCCTTCTATAAAACCTCTGCTCGTTGAGATTGGCCCAGCTGCATCAACCACGAAAACTGACAGAGTTCCTCAAGTCAACAACAACAACAGCAATGCACCGTGCCCGGGATCACCTAAGATATCGCATTTTCCAAGTCTTCCCGACATGTCTCCGAAGAAAGTATCTTCAGTACATAATGTCTATGTCTCTCCACTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCAAAAAGCTATTACGCTTGTGTCGGGGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATAGTACACCACGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTGGTCAGTGATTCCCTGGTGGCGAACAGCCTTTACCCACAAAATGGAAGTTGTGGATCATCCTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAG 3162 42.22 MYRSERFLEDCDKKFHSVSFFSFFLRAVFMENVEETKPSVTNICLPDGVTDTAEVQFSEICENGLRLDENYCNQALKLYRETKHLLVANISAIGSGIPEEANRFWSAFVLYSVKRLTDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSALSCPTGYLSDYHRFGWLLFLALRVHSFSRFKDLVTCTNGLVSILAILILHIPVRFRKFDILDSERFVKKGGKGVDLLGSLCNVYDTSEVELREIMDKANSLIEDILKKKPRSASECNSKSLENIDTEGLICFEGLMEELSLSSSLESLEKDYEDAIHNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGFKRKFDSICSPARTITSPMSPLRSPGSHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLVVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLPGQNGHIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQRILGQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFKEIIYNYRKQPQCKPQIFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSIKPLLVEIGPAASTTKTDRVPQVNNNNSNAPCPGSPKISHFPSLPDMSPKKVSSVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNSTPRKLRGTLNFDDADVGLVSDSLVANSLYPQNGSCGSSSGAPIKSEQPDS 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7064281 7071035 + CmoCh04G013870.1 Cmo04g01387 380362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01387 1053 MobiDBLite consensus disorder prediction 1034 1053 - -
Cmo04g01387 1053 MobiDBLite consensus disorder prediction 913 932 - -
Cmo04g01387 1053 Gene3D - 450 638 - -
Cmo04g01387 1053 SMART DUF3452_2 116 265 IPR024599 -
Cmo04g01387 1053 Pfam Retinoblastoma-associated protein A domain 447 648 IPR002720 GO:0005634|GO:0051726
Cmo04g01387 1053 SMART RB_A_2 447 648 IPR002720 GO:0005634|GO:0051726
Cmo04g01387 1053 PANTHER BNACNNG22930D PROTEIN 34 1039 - -
Cmo04g01387 1053 Gene3D - 735 925 - -
Cmo04g01387 1053 Pfam Retinoblastoma-associated protein B domain 772 899 IPR002719 GO:0005634|GO:0051726
Cmo04g01387 1053 SUPERFAMILY Cyclin-like 455 650 IPR036915 -
Cmo04g01387 1053 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 34 1039 IPR028309 GO:0006357|GO:0051726
Cmo04g01387 1053 MobiDBLite consensus disorder prediction 913 931 - -
Cmo04g01387 1053 SUPERFAMILY Cyclin-like 770 909 IPR036915 -
Cmo04g01387 1053 Pfam Domain of unknown function (DUF3452) 126 265 IPR024599 -
Cmo04g01387 1053 Coils Coil 360 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00852 Cmo-Chr18:9847457 Cmo04g01387 Cmo-Chr4:7064281 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9616 PF01858 RB_A 4.20E-64 CL0065 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01387 K04681 - csv:101219810 1842.01