Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01393 ATGACTGATGTCAGTCCAAGGACTGATATCTCTACCGACGTCGACACAGATGACAAAAACCAGAGGCTCGATATGGTTCAGTGGAACACGGTGGCTTCTGATTCGAGTGATAGAACGAAAGATAAGTCCGATCAGAAGACTCTACGTAGGCTCGCGCAGAATCGTGAAGCTGCCCGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTAGAGAGCAGTCGTTTAAAGTTGACACAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAGTGTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATTACTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTGAACTCTCATGCAAGTGATACTGAACTCCGAATGATTGTCGATGGCGTCTTGGCTCATTACGATGAGGTTTTTCGGCTAAAGGGCATTGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCGGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTCATGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAGTCGTTGGCCGAGACGTTGTCTAGCGGATCTCTTGGCTCCTCGAACACATCTGGCAATGTGGCAAACTATATGGGTCAAATGGCCACAGCCATGGGCAAATTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTACAACAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGTGCGCTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCACTGTGGCTTGCTCGCCCAAAAGAGTGA 996 47.69 MTDVSPRTDISTDVDTDDKNQRLDMVQWNTVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSITGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGVLAHYDEVFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQFMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKFGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7083472 7088818 - CmoCh04G013930.1 Cmo04g01393 380368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01393 331 MobiDBLite consensus disorder prediction 1 47 - -
Cmo04g01393 331 Coils Coil 122 142 - -
Cmo04g01393 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 331 - -
Cmo04g01393 331 SMART brlzneu 42 105 IPR004827 GO:0003700|GO:0006355
Cmo04g01393 331 Pfam Basic region leucine zipper 42 88 IPR004827 GO:0003700|GO:0006355
Cmo04g01393 331 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700|GO:0006355
Cmo04g01393 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Cmo04g01393 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700|GO:0006355
Cmo04g01393 331 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 331 - -
Cmo04g01393 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351|GO:0043565
Cmo04g01393 331 Gene3D - 45 94 - -
Cmo04g01393 331 Coils Coil 65 92 - -
Cmo04g01393 331 Pfam Seed dormancy control 128 203 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01393 Cmo-Chr4:7083472 Cmo06g00021 Cmo-Chr6:139954 0 dispersed
Cmo13g00330 Cmo-Chr13:4188990 Cmo04g01393 Cmo-Chr4:7083472 1.10E-116 transposed
Cmo18g00857 Cmo-Chr18:9890829 Cmo04g01393 Cmo-Chr4:7083472 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9617 PF14144 DOG1 7.40E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01393 K14431 - csv:101216885 583.948