Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01404 ATGGCCCTTGTCTCTTCTAATGCTCAATTCCATGTCTTGGCTGTCGATGACAGCCTTGTAGACAGGAAGCTGATTGAAAGGCTGCTCAAAACTTCCTCCTTCAATGTTACGGCTGTGGATTCTGGAAGCAAGGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCATCCATTCTCCTTATTCCCCTGAAAATCATCATCATCAACATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGAAAATCCTATCTGGTTTTGCAGGAATCTGACTCACTTAAAGACATACCTGTCGTGATTATGTCCTCTGAGAATGTTCCAGCAAGAATCAACAGATGTTTGGAAGAAGGAGCCGAGGAGTTTTTGCTGAAACCAGTGAAATTATCTGATGTCAACAAGCTTAAGCCTTTCATATGCAGAGGAAAAGCCAAGGAAATGGATTGCAACAATCTCAAGAGAAAGGAAATGGAACAGAGTCAATCATCTGAGAGAACAAGAGCAAAATACAATGAACCTCTCTAA 582 40.89 MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPYSPENHHHQHQEIEVNLIITDYCMPEMTGYDLLRKIKARKSYLVLQESDSLKDIPVVIMSSENVPARINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDCNNLKRKEMEQSQSSERTRAKYNEPL 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7166482 7167765 + CmoCh04G014040.1 Cmo04g01404 380379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01404 193 Pfam Response regulator receiver domain 12 151 IPR001789 GO:0000160
Cmo04g01404 193 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 4 191 - -
Cmo04g01404 193 CDD REC_typeA_ARR 12 154 - -
Cmo04g01404 193 Gene3D - 11 191 - -
Cmo04g01404 193 ProSiteProfiles Response regulatory domain profile. 11 159 IPR001789 GO:0000160
Cmo04g01404 193 SMART REC_2 10 155 IPR001789 GO:0000160
Cmo04g01404 193 SUPERFAMILY CheY-like 10 151 IPR011006 -
Cmo04g01404 193 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 191 IPR045279 GO:0009736
Cmo04g01404 193 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00167 Cmo-Chr3:2501963 Cmo04g01404 Cmo-Chr4:7166482 3.32E-23 dispersed
Cmo04g01404 Cmo-Chr4:7166482 Cmo14g00521 Cmo-Chr14:2633524 7.64E-68 dispersed
Cmo04g01404 Cmo-Chr4:7166482 Cmo07g01403 Cmo-Chr7:8052325 9.50E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9622 PF00072 Response_reg 7.90E-18 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01404 K14492 - csv:101207245 275.789