Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01404 | ATGGCCCTTGTCTCTTCTAATGCTCAATTCCATGTCTTGGCTGTCGATGACAGCCTTGTAGACAGGAAGCTGATTGAAAGGCTGCTCAAAACTTCCTCCTTCAATGTTACGGCTGTGGATTCTGGAAGCAAGGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCATCCATTCTCCTTATTCCCCTGAAAATCATCATCATCAACATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGAAAATCCTATCTGGTTTTGCAGGAATCTGACTCACTTAAAGACATACCTGTCGTGATTATGTCCTCTGAGAATGTTCCAGCAAGAATCAACAGATGTTTGGAAGAAGGAGCCGAGGAGTTTTTGCTGAAACCAGTGAAATTATCTGATGTCAACAAGCTTAAGCCTTTCATATGCAGAGGAAAAGCCAAGGAAATGGATTGCAACAATCTCAAGAGAAAGGAAATGGAACAGAGTCAATCATCTGAGAGAACAAGAGCAAAATACAATGAACCTCTCTAA | 582 | 40.89 | MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPYSPENHHHQHQEIEVNLIITDYCMPEMTGYDLLRKIKARKSYLVLQESDSLKDIPVVIMSSENVPARINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDCNNLKRKEMEQSQSSERTRAKYNEPL | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7166482 | 7167765 | + | CmoCh04G014040.1 | Cmo04g01404 | 380379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01404 | 193 | Pfam | Response regulator receiver domain | 12 | 151 | IPR001789 | GO:0000160 | |
Cmo04g01404 | 193 | PANTHER | RESPONSE REGULATOR ARR8, PUTATIVE-RELATED | 4 | 191 | - | - | |
Cmo04g01404 | 193 | CDD | REC_typeA_ARR | 12 | 154 | - | - | |
Cmo04g01404 | 193 | Gene3D | - | 11 | 191 | - | - | |
Cmo04g01404 | 193 | ProSiteProfiles | Response regulatory domain profile. | 11 | 159 | IPR001789 | GO:0000160 | |
Cmo04g01404 | 193 | SMART | REC_2 | 10 | 155 | IPR001789 | GO:0000160 | |
Cmo04g01404 | 193 | SUPERFAMILY | CheY-like | 10 | 151 | IPR011006 | - | |
Cmo04g01404 | 193 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 4 | 191 | IPR045279 | GO:0009736 | |
Cmo04g01404 | 193 | MobiDBLite | consensus disorder prediction | 170 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00167 | Cmo-Chr3:2501963 | Cmo04g01404 | Cmo-Chr4:7166482 | 3.32E-23 | dispersed | |
Cmo04g01404 | Cmo-Chr4:7166482 | Cmo14g00521 | Cmo-Chr14:2633524 | 7.64E-68 | dispersed | |
Cmo04g01404 | Cmo-Chr4:7166482 | Cmo07g01403 | Cmo-Chr7:8052325 | 9.50E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9622 | PF00072 | Response_reg | 7.90E-18 | CL0304 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01404 | K14492 | - | csv:101207245 | 275.789 |