Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01412 ATGAGTTTGGATTCATTTTTTCCAGAAATGTCAGCCAAGGTACAACAGATTGATCAAAAGGGTGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCACATCTCAGTCAGCCAATAAATTCTGTGCAGATTGTGGGTCTCCAGATCCAAAATGGGTGTCTTTGAATTTGGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGCTAGATGATTGGACAGATGAACAAGTTGATGCTTTGACGAGTATAGGTGGAAATACTGCCGTAAACAAAAAGTACGAAGTTTTCATCCCAGACAGCGATAAGAAACCAAAACCAGACTCATCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTACTGCAATTCGCAAGTCTTGACGACCAGATTTTCTGTCCTTTTCCACCCCCGCAGAAGAAATCATCATTCTGGCATAGCATTTCTTATAATGGAAGCGAAGAAAGGAGGAATTACGAAAAACTACCGACAAAAACTCGAATCGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACCGAAGAGCAACAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTAGTTAGAGGAACCAATTTAGCTGTCAGGGATATGGTGACAAGCGACCCATATGTAATTCTATCGTTGGGCAACCAATCAGTGAAGACACGAGTCATCAAGAGCAGTTTGAATCCAGTGTGGAATGAGAGCCTAATGCTGTCAATTCCTGATCACATTCCTCCATTAAGAGTGATTGTGTATGACAAAGACACATTTTCAACCGACGACTTCATGGGTGAAGCAGAAATTGATATCCATCCACTGCTCTCGGCAGCCCAAGCCTGTGAGAGATCCACAGCCAGTGAACCGATGCAGCTAGGAAAATGGGTAGCATGCAAGGAGAACACTCTTGCAAAGGATGGCATAATCACTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGAGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1140 43.42 MSLDSFFPEMSAKVQQIDQKGGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLNLGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSIGGNTAVNKKYEVFIPDSDKKPKPDSSIEERLDFIRKKYELLQFASLDDQIFCPFPPPQKKSSFWHSISYNGSEERRNYEKLPTKTRIGSAFRNSWGRKDSEPKSNKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDMVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLRVIVYDKDTFSTDDFMGEAEIDIHPLLSAAQACERSTASEPMQLGKWVACKENTLAKDGIITLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7187078 7191732 - CmoCh04G014120.1 Cmo04g01412 380387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01412 379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 222 315 IPR035892 -
Cmo04g01412 379 CDD C2_ArfGAP 222 366 - -
Cmo04g01412 379 Pfam Putative GTPase activating protein for Arf 28 142 IPR001164 GO:0005096
Cmo04g01412 379 SMART arf_gap_3 27 149 IPR001164 GO:0005096
Cmo04g01412 379 PRINTS HIV Rev interacting protein signature 79 100 IPR001164 GO:0005096
Cmo04g01412 379 PRINTS HIV Rev interacting protein signature 39 58 IPR001164 GO:0005096
Cmo04g01412 379 PRINTS HIV Rev interacting protein signature 58 75 IPR001164 GO:0005096
Cmo04g01412 379 SMART C2_3c 224 319 IPR000008 -
Cmo04g01412 379 SUPERFAMILY ArfGap/RecO-like zinc finger 27 142 IPR037278 -
Cmo04g01412 379 ProSiteProfiles C2 domain profile. 205 321 IPR000008 -
Cmo04g01412 379 ProSiteProfiles ARF GTPase-activating proteins domain profile. 27 141 IPR001164 GO:0005096
Cmo04g01412 379 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 379 IPR044518 GO:0005096|GO:0005543
Cmo04g01412 379 CDD ArfGap 30 136 - -
Cmo04g01412 379 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 15 379 - -
Cmo04g01412 379 Pfam C2 domain 224 316 IPR000008 -
Cmo04g01412 379 Gene3D C2 domain 222 377 IPR035892 -
Cmo04g01412 379 Gene3D Arf GTPase activating protein 9 148 IPR038508 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01412 Cmo-Chr4:7187078 Cmo18g00872 Cmo-Chr18:10020555 0 dispersed
Cmo04g01412 Cmo-Chr4:7187078 Cmo04g02315 Cmo-Chr4:17213598 1.01E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01412 K12486 - csv:101221541 640.573