Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01413 ATGATTCCCTTGATTTCTTCATGGGGCATTTTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGATGACGTTCGAACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGCTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATTCATCAGTTTCTGGAGGTGGATTTGGTGGTGAGGTGGGTAGGGGCTGTCGTTGGAGGCAGAAAATGGACGTTCGGCATCCCGAAACTTCGAGAACTCTTGTTATGTTCGAACGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTCGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCTAACTTTTGGATGTGTGGGCATATACCCTTACTATAGCAAGCTGAAACATGAATCTCAATGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAGTGCACGGTTGTTGGCGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCATAATGGAAGCACTTTCAATCACCGGTACGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTTGAAGCTTTTCAGCTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGACGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAGGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGAGACAGTTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAG 1056 46.78 MIPLISSWGILLIKMSSANPYFDDVRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQFLEVDLVVRWVGAVVGGRKWTFGIPKLRELLLCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYLTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7192349 7195496 - CmoCh04G014130.1 Cmo04g01413 380388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01413 351 CDD Sina 217 345 - -
Cmo04g01413 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 116 351 - -
Cmo04g01413 351 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 214 344 IPR008974 GO:0005515
Cmo04g01413 351 ProSiteProfiles Zinc finger SIAH-type profile. 156 216 IPR013010 GO:0008270
Cmo04g01413 351 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 116 351 - -
Cmo04g01413 351 CDD RING-HC_SIAHs 69 139 - -
Cmo04g01413 351 Gene3D Classic Zinc Finger 191 213 - -
Cmo04g01413 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 21 85 - -
Cmo04g01413 351 SUPERFAMILY TRAF domain-like 156 348 - -
Cmo04g01413 351 Pfam Seven in absentia protein family 145 344 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo04g01413 351 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 21 85 - -
Cmo04g01413 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 190 IPR013083 -
Cmo04g01413 351 MobiDBLite consensus disorder prediction 29 57 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01413 Cmo04g02313 CCT
Cmo04g01413 Cmo15g00849 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00108 Cmo-Chr3:1529840 Cmo04g01413 Cmo-Chr4:7192349 9.59E-158 dispersed
Cmo04g01413 Cmo-Chr4:7192349 Cmo18g00871 Cmo-Chr18:10014647 0 dispersed
Cmo04g01413 Cmo-Chr4:7192349 Cmo15g00849 Cmo-Chr15:4296437 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01413 K04506 - csv:101205198 605.905