Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01413 | ATGATTCCCTTGATTTCTTCATGGGGCATTTTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGATGACGTTCGAACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGCTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATTCATCAGTTTCTGGAGGTGGATTTGGTGGTGAGGTGGGTAGGGGCTGTCGTTGGAGGCAGAAAATGGACGTTCGGCATCCCGAAACTTCGAGAACTCTTGTTATGTTCGAACGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTCGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCTAACTTTTGGATGTGTGGGCATATACCCTTACTATAGCAAGCTGAAACATGAATCTCAATGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAGTGCACGGTTGTTGGCGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCATAATGGAAGCACTTTCAATCACCGGTACGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTTGAAGCTTTTCAGCTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGACGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAGGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGAGACAGTTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAG | 1056 | 46.78 | MIPLISSWGILLIKMSSANPYFDDVRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQFLEVDLVVRWVGAVVGGRKWTFGIPKLRELLLCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYLTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7192349 | 7195496 | - | CmoCh04G014130.1 | Cmo04g01413 | 380388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01413 | 351 | CDD | Sina | 217 | 345 | - | - | |
Cmo04g01413 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 116 | 351 | - | - | |
Cmo04g01413 | 351 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 214 | 344 | IPR008974 | GO:0005515 | |
Cmo04g01413 | 351 | ProSiteProfiles | Zinc finger SIAH-type profile. | 156 | 216 | IPR013010 | GO:0008270 | |
Cmo04g01413 | 351 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 116 | 351 | - | - | |
Cmo04g01413 | 351 | CDD | RING-HC_SIAHs | 69 | 139 | - | - | |
Cmo04g01413 | 351 | Gene3D | Classic Zinc Finger | 191 | 213 | - | - | |
Cmo04g01413 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 21 | 85 | - | - | |
Cmo04g01413 | 351 | SUPERFAMILY | TRAF domain-like | 156 | 348 | - | - | |
Cmo04g01413 | 351 | Pfam | Seven in absentia protein family | 145 | 344 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cmo04g01413 | 351 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 21 | 85 | - | - | |
Cmo04g01413 | 351 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 190 | IPR013083 | - | |
Cmo04g01413 | 351 | MobiDBLite | consensus disorder prediction | 29 | 57 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01413 | Cmo04g02313 | CCT | |
Cmo04g01413 | Cmo15g00849 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00108 | Cmo-Chr3:1529840 | Cmo04g01413 | Cmo-Chr4:7192349 | 9.59E-158 | dispersed | |
Cmo04g01413 | Cmo-Chr4:7192349 | Cmo18g00871 | Cmo-Chr18:10014647 | 0 | dispersed | |
Cmo04g01413 | Cmo-Chr4:7192349 | Cmo15g00849 | Cmo-Chr15:4296437 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01413 | K04506 | - | csv:101205198 | 605.905 |