Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01429 ATGGGGAAGAAAGGGAGTTGTTTCTTTGGAGTGAGGAAAGTTCTCAGTCACCATCATGAGAAGAAAGACAAGAAACCAAACAAGTGTAAGAATAAATGGTTCCAAGAGGAGGAGAGTGTGGATGTGATTTCCTTTTTGGAACAATCCCAATTGGAGGTTCTTGCACAGCCTCCTATGAAAGAAACAAGCGAGCTTGCGCATTTGGAGGCTGCGGAGCCTTCTCTTGCTGAAGCTCAGCTGGCTGTGGAGGTTGAATATCCACCTAGTTTTATCCCTCGTCGGCCAGAGATGTCGGAGGAAACAGCTGCTATTATGATTCAAGCTGCGTTTCGTGGATATACGGCACGGAGAGCATTGAGAGCTCTCAAAGCGTCGATGAGATTGAAGGCGTTGGCACAAGGGCAGTCTGTCAAACGGCAAGTGGCCCATACTTTAAAATACATGCAGACCATTACTCATTTACAGGCAGAGATTCATAAGAGGAGAATAAGAATGTCCGAAGAAAATCGGGCTCTTCATCGGCAACTTTATAAGAAACGTGAGAAACATGTCGAGAAGTTAAAATCTTCTATGGACAATGACTGGAATCACAGCACCCAATCTAAGGCACAAATTGAAGCTAAATTATTGAACAAGCAAGTAGGTGCACTTAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCCAACATGGAAATTTTTTTCAAGAACTGCAACCCCCAGTTTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCATGGGAACTCCGAATCACCGACGAGCAACTGGATCACATTTCTGTCATGAGCATTGCAACCCGTGCTTCTGTGGTTGATATAATCCAAATTTGTGCTCGTCGTGATCAGATCTTTTATACCAAGCCTTCTCTAAGGTCTCCTACAAGCCAACTGCATAGGCATCATTCTCCTTCAACTTCTAAGCCACTATCTCCCTCATCTAGCAGAAACAAAAAGAATGCAGCCAATTCAGGGATAAGCAGCTGGGGCGCGTATGATGTCAATTCAAAGCTCTTCCGGAGGCATACTATTGGAGGGTCATCACTCAAGGATGATACAACCATTGCCAGTTCACCTTCAGTTTCATGTCACACAACGCCATCAAAGGCTGTCAAGACTCCGTCCCGGTTTGCAAGTTCATCTAGAACAGAGAAGAAAGGAACAATGGAAAAAGGATCTACAAGTACAGGAAGCATTAACCCAAGCCTTGCCCCAAATTCCACCCGTCTTCTTCTCATTTTTCCTTCCAATCTGTGCTACAATGGCGACCTAGAACTCTCTCGTCTCTTTGTTTCTTTCTGCAGAAATGGATTGCTCTTGAGCCCTGCCGAAATGTGTGATACGCATCGATTTCAACTTCGTCTCTTTGGGTTTTGTTGGTTTCGGATTCAATTATCGCGGTCATGCTTTTATTCAATCGGTTATCCACACCGTCTGGTTGTGATTCTTTTGGATTTATTGATTGAGAATTTCATCTAG 1533 44.68 MGKKGSCFFGVRKVLSHHHEKKDKKPNKCKNKWFQEEESVDVISFLEQSQLEVLAQPPMKETSELAHLEAAEPSLAEAQLAVEVEYPPSFIPRRPEMSEETAAIMIQAAFRGYTARRALRALKASMRLKALAQGQSVKRQVAHTLKYMQTITHLQAEIHKRRIRMSEENRALHRQLYKKREKHVEKLKSSMDNDWNHSTQSKAQIEAKLLNKQVGALRRERALAYAYSHQPTWKFFSRTATPSFMDPNNPHWGWSWLERWMAARPWELRITDEQLDHISVMSIATRASVVDIIQICARRDQIFYTKPSLRSPTSQLHRHHSPSTSKPLSPSSSRNKKNAANSGISSWGAYDVNSKLFRRHTIGGSSLKDDTTIASSPSVSCHTTPSKAVKTPSRFASSSRTEKKGTMEKGSTSTGSINPSLAPNSTRLLLIFPSNLCYNGDLELSRLFVSFCRNGLLLSPAEMCDTHRFQLRLFGFCWFRIQLSRSCFYSIGYPHRLVVILLDLLIENFI 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7278716 7284778 - CmoCh04G014290.1 Cmo04g01429 380404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01429 510 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Cmo04g01429 510 Gene3D - 44 127 - -
Cmo04g01429 510 MobiDBLite consensus disorder prediction 368 400 - -
Cmo04g01429 510 PANTHER IQ-DOMAIN 5-RELATED 2 399 - -
Cmo04g01429 510 SMART iq_5 98 120 IPR000048 GO:0005515
Cmo04g01429 510 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Cmo04g01429 510 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 2 399 - -
Cmo04g01429 510 MobiDBLite consensus disorder prediction 368 419 - -
Cmo04g01429 510 MobiDBLite consensus disorder prediction 308 340 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01429 Cmo04g02721 CCT
Cmo04g01429 Cmo15g00445 CCT
Cmo04g02721 Cmo04g01429 ECH
Cmo04g01429 Cmo04g02721 ECH
Cmo04g01429 Cmo15g00445 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01429 Cmo-Chr4:7278716 Cmo07g00981 Cmo-Chr7:4829625 1.60E-58 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo04g01429 Cmo-Chr4:7278716 6.73E-98 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g01429 Cmo-Chr4:7278716 3.49E-159 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo04g02721 Cmo-Chr4:19731029 3.44E-102 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo06g00353 Cmo-Chr6:1719317 5.16E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01429 - - csv:101223184 507.679