Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01429 ATGGGGAAGAAAGGGAGTTGTTTCTTTGGAGTGAGGAAAGTTCTCAGTCACCATCATGAGAAGAAAGACAAGAAACCAAACAAGTGTAAGAATAAATGGTTCCAAGAGGAGGAGAGTGTGGATGTGATTTCCTTTTTGGAACAATCCCAATTGGAGGTTCTTGCACAGCCTCCTATGAAAGAAACAAGCGAGCTTGCGCATTTGGAGGCTGCGGAGCCTTCTCTTGCTGAAGCTCAGCTGGCTGTGGAGGTTGAATATCCACCTAGTTTTATCCCTCGTCGGCCAGAGATGTCGGAGGAAACAGCTGCTATTATGATTCAAGCTGCGTTTCGTGGATATACGGCACGGAGAGCATTGAGAGCTCTCAAAGCGTCGATGAGATTGAAGGCGTTGGCACAAGGGCAGTCTGTCAAACGGCAAGTGGCCCATACTTTAAAATACATGCAGACCATTACTCATTTACAGGCAGAGATTCATAAGAGGAGAATAAGAATGTCCGAAGAAAATCGGGCTCTTCATCGGCAACTTTATAAGAAACGTGAGAAACATGTCGAGAAGTTAAAATCTTCTATGGACAATGACTGGAATCACAGCACCCAATCTAAGGCACAAATTGAAGCTAAATTATTGAACAAGCAAGTAGGTGCACTTAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCCAACATGGAAATTTTTTTCAAGAACTGCAACCCCCAGTTTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCATGGGAACTCCGAATCACCGACGAGCAACTGGATCACATTTCTGTCATGAGCATTGCAACCCGTGCTTCTGTGGTTGATATAATCCAAATTTGTGCTCGTCGTGATCAGATCTTTTATACCAAGCCTTCTCTAAGGTCTCCTACAAGCCAACTGCATAGGCATCATTCTCCTTCAACTTCTAAGCCACTATCTCCCTCATCTAGCAGAAACAAAAAGAATGCAGCCAATTCAGGGATAAGCAGCTGGGGCGCGTATGATGTCAATTCAAAGCTCTTCCGGAGGCATACTATTGGAGGGTCATCACTCAAGGATGATACAACCATTGCCAGTTCACCTTCAGTTTCATGTCACACAACGCCATCAAAGGCTGTCAAGACTCCGTCCCGGTTTGCAAGTTCATCTAGAACAGAGAAGAAAGGAACAATGGAAAAAGGATCTACAAGTACAGGAAGCATTAACCCAAGCCTTGCCCCAAATTCCACCCGTCTTCTTCTCATTTTTCCTTCCAATCTGTGCTACAATGGCGACCTAGAACTCTCTCGTCTCTTTGTTTCTTTCTGCAGAAATGGATTGCTCTTGAGCCCTGCCGAAATGTGTGATACGCATCGATTTCAACTTCGTCTCTTTGGGTTTTGTTGGTTTCGGATTCAATTATCGCGGTCATGCTTTTATTCAATCGGTTATCCACACCGTCTGGTTGTGATTCTTTTGGATTTATTGATTGAGAATTTCATCTAG 1533 44.68 MGKKGSCFFGVRKVLSHHHEKKDKKPNKCKNKWFQEEESVDVISFLEQSQLEVLAQPPMKETSELAHLEAAEPSLAEAQLAVEVEYPPSFIPRRPEMSEETAAIMIQAAFRGYTARRALRALKASMRLKALAQGQSVKRQVAHTLKYMQTITHLQAEIHKRRIRMSEENRALHRQLYKKREKHVEKLKSSMDNDWNHSTQSKAQIEAKLLNKQVGALRRERALAYAYSHQPTWKFFSRTATPSFMDPNNPHWGWSWLERWMAARPWELRITDEQLDHISVMSIATRASVVDIIQICARRDQIFYTKPSLRSPTSQLHRHHSPSTSKPLSPSSSRNKKNAANSGISSWGAYDVNSKLFRRHTIGGSSLKDDTTIASSPSVSCHTTPSKAVKTPSRFASSSRTEKKGTMEKGSTSTGSINPSLAPNSTRLLLIFPSNLCYNGDLELSRLFVSFCRNGLLLSPAEMCDTHRFQLRLFGFCWFRIQLSRSCFYSIGYPHRLVVILLDLLIENFI 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7278716 7284778 - CmoCh04G014290.1 Cmo04g01429 380404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01429 510 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Cmo04g01429 510 Gene3D - 44 127 - -
Cmo04g01429 510 MobiDBLite consensus disorder prediction 368 400 - -
Cmo04g01429 510 PANTHER IQ-DOMAIN 5-RELATED 2 399 - -
Cmo04g01429 510 SMART iq_5 98 120 IPR000048 GO:0005515
Cmo04g01429 510 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Cmo04g01429 510 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 2 399 - -
Cmo04g01429 510 MobiDBLite consensus disorder prediction 368 419 - -
Cmo04g01429 510 MobiDBLite consensus disorder prediction 308 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01429 - - - csv:101223184 507.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01429 Cmo04g02721 CCT
Cmo04g01429 Cmo15g00445 CCT
Cmo04g02721 Cmo04g01429 ECH
Cmo04g01429 Cmo04g02721 ECH
Cmo04g01429 Cmo15g00445 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01429 Cmo-Chr4:7278716 Cmo07g00981 Cmo-Chr7:4829625 1.60E-58 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo04g01429 Cmo-Chr4:7278716 6.73E-98 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g01429 Cmo-Chr4:7278716 3.49E-159 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo04g02721 Cmo-Chr4:19731029 3.44E-102 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo06g00353 Cmo-Chr6:1719317 5.16E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01429 Cmo_Chr04 FPKM 5.354361 4.789518 7.146769 7.079366 5.802642 7.150334 7.065248 5.844097 5.173096 7.558967