Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01442 ATGGCGAAAGACGACGCGACGGCGCCGAGAGGGTTCTCAGGAAAGGACTACCACGACCCTCCACCGGCTCCGCTGTTCGACGCGGCGGAGCTCGGCAAGTGGTCTTTTTACAGGGCCATCATTGCCGAGTTCATCGCCACTCTTCTCTTTCTCTATGTCACCATCTTGACTGTGATTGGCTACAGTAGCCAGACCGACACTGACAAACCCGGCGCCGACGCTTGCGACGGCGTTGGGATCCTCGGCATCGCTTGGGCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACCGCCGGCATTTCAGGTGGGCACATCAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGGAAGGTGTCGTTGGTGCGGGCAGTGGCGTACATTGTGGCTCAGTGCTTAGGGGCCGTATGCGGGACGGGGCTAGTAAAAGCGTTCCAAAAGGCCTACTACCACAAGTACGGCGGCGGTGCGAACCAACTCGCCCTCGGCTACTCTAAAGGCACAGGCTTGGGGGCTGAAATCGTCGGTACATTCATCTTGGTCTACACCGTCTTCTCCGCCACTGATCCCAAGCGAAGCGCCAGAGACTCCCATGTCCCTGTATTGGCTCCACTCCCGATTGGGTTCGCTGTGTTTATGGTTCACTTGGCCACGATCCCCATCACCGGCACCGGCATCAACCCCGCTAGAAGTTTCGGCCCGGCTGTTATCTTGAACCATGAAAAACCGTGGAATGATCAATGGATATTTTGGGTTGGGCCATTCGTGGGAGCCGCCATCGCAGCCTTCTACCACCAGTTCATTTTGAGGGCCGGCGCCGTCAAGGCTCTCGGGTCTTTCAGGAGCAGCCCATCCGTTTGA 864 57.99 MAKDDATAPRGFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTVIGYSSQTDTDKPGADACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYIVAQCLGAVCGTGLVKAFQKAYYHKYGGGANQLALGYSKGTGLGAEIVGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVILNHEKPWNDQWIFWVGPFVGAAIAAFYHQFILRAGAVKALGSFRSSPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7380649 7384618 - CmoCh04G014420.1 Cmo04g01442 380417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01442 287 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cmo04g01442 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cmo04g01442 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cmo04g01442 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 284 IPR034294 -
Cmo04g01442 287 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g01442 287 PANTHER AQUAPORIN PIP2-4-RELATED 10 284 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01442 Cmo04g02700 CCT
Cmo04g02700 Cmo04g01442 ECH
Cmo04g01442 Cmo04g02700 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01442 Cmo-Chr4:7380649 Cmo07g00973 Cmo-Chr7:4770232 1.16E-168 dispersed
Cmo11g01746 Cmo-Chr11:12320740 Cmo04g01442 Cmo-Chr4:7380649 3.64E-151 dispersed
Cmo15g00466 Cmo-Chr15:2117137 Cmo04g01442 Cmo-Chr4:7380649 3.08E-08 wgd
Cmo18g00896 Cmo-Chr18:10199572 Cmo04g01442 Cmo-Chr4:7380649 1.23E-171 wgd
Cmo04g01442 Cmo-Chr4:7380649 Cmo04g02700 Cmo-Chr4:19632374 1.33E-171 wgd
Cmo04g01442 Cmo-Chr4:7380649 Cmo06g00371 Cmo-Chr6:1792397 5.38E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01442 K09872 - csv:101204956 548.51