Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01442 | ATGGCGAAAGACGACGCGACGGCGCCGAGAGGGTTCTCAGGAAAGGACTACCACGACCCTCCACCGGCTCCGCTGTTCGACGCGGCGGAGCTCGGCAAGTGGTCTTTTTACAGGGCCATCATTGCCGAGTTCATCGCCACTCTTCTCTTTCTCTATGTCACCATCTTGACTGTGATTGGCTACAGTAGCCAGACCGACACTGACAAACCCGGCGCCGACGCTTGCGACGGCGTTGGGATCCTCGGCATCGCTTGGGCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACCGCCGGCATTTCAGGTGGGCACATCAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGGAAGGTGTCGTTGGTGCGGGCAGTGGCGTACATTGTGGCTCAGTGCTTAGGGGCCGTATGCGGGACGGGGCTAGTAAAAGCGTTCCAAAAGGCCTACTACCACAAGTACGGCGGCGGTGCGAACCAACTCGCCCTCGGCTACTCTAAAGGCACAGGCTTGGGGGCTGAAATCGTCGGTACATTCATCTTGGTCTACACCGTCTTCTCCGCCACTGATCCCAAGCGAAGCGCCAGAGACTCCCATGTCCCTGTATTGGCTCCACTCCCGATTGGGTTCGCTGTGTTTATGGTTCACTTGGCCACGATCCCCATCACCGGCACCGGCATCAACCCCGCTAGAAGTTTCGGCCCGGCTGTTATCTTGAACCATGAAAAACCGTGGAATGATCAATGGATATTTTGGGTTGGGCCATTCGTGGGAGCCGCCATCGCAGCCTTCTACCACCAGTTCATTTTGAGGGCCGGCGCCGTCAAGGCTCTCGGGTCTTTCAGGAGCAGCCCATCCGTTTGA | 864 | 57.99 | MAKDDATAPRGFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTVIGYSSQTDTDKPGADACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYIVAQCLGAVCGTGLVKAFQKAYYHKYGGGANQLALGYSKGTGLGAEIVGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVILNHEKPWNDQWIFWVGPFVGAAIAAFYHQFILRAGAVKALGSFRSSPSV | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7380649 | 7384618 | - | CmoCh04G014420.1 | Cmo04g01442 | 380417 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01442 | 287 | TIGRFAM | MIP: MIP family channel proteins | 42 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Cmo04g01442 | 287 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | Pfam | Major intrinsic protein | 31 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | SUPERFAMILY | Aquaporin-like | 31 | 271 | IPR023271 | - | |
Cmo04g01442 | 287 | Gene3D | Glycerol uptake facilitator protein. | 23 | 287 | IPR023271 | - | |
Cmo04g01442 | 287 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 10 | 284 | IPR034294 | - | |
Cmo04g01442 | 287 | CDD | MIP | 38 | 269 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo04g01442 | 287 | PANTHER | AQUAPORIN PIP2-4-RELATED | 10 | 284 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01442 | Cmo04g02700 | CCT | |
Cmo04g02700 | Cmo04g01442 | ECH | |
Cmo04g01442 | Cmo04g02700 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01442 | Cmo-Chr4:7380649 | Cmo07g00973 | Cmo-Chr7:4770232 | 1.16E-168 | dispersed | |
Cmo11g01746 | Cmo-Chr11:12320740 | Cmo04g01442 | Cmo-Chr4:7380649 | 3.64E-151 | dispersed | |
Cmo15g00466 | Cmo-Chr15:2117137 | Cmo04g01442 | Cmo-Chr4:7380649 | 3.08E-08 | wgd | |
Cmo18g00896 | Cmo-Chr18:10199572 | Cmo04g01442 | Cmo-Chr4:7380649 | 1.23E-171 | wgd | |
Cmo04g01442 | Cmo-Chr4:7380649 | Cmo04g02700 | Cmo-Chr4:19632374 | 1.33E-171 | wgd | |
Cmo04g01442 | Cmo-Chr4:7380649 | Cmo06g00371 | Cmo-Chr6:1792397 | 5.38E-145 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01442 | K09872 | - | csv:101204956 | 548.51 |