Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01454 ATGGGTCGGTCGGAGAAGGAGTTGAAAGATTTGGTGGTGGCTCAACTGCCGGAGTTTGTGAGGGAGATTTCGGAGCTTCCCGAGTGCAATGGCGTGTGTAAGAAGATGTATGGGGAGCTGATTCGAAGAGTGAAGTTGTTGAGTCCTATAGAGCTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTTAAAACTGCTTTGGATTCTGCTATGGAGCTTCTTAGGTCGGTCAACCGAGGCAGCAAGCTCTATCAGGCTTTGCAATTGGAGAAAATAGTACTTGAGTTTCAACATAAGACACAAGATATTGCAGCTGCACTCAGCAAGCTTCCCATCGACGAGCTCGGGATCTCAGACGAGGTCCGGGAACAGACTGAACTTGTTCAATCCCAATTCAAACGAGCGAAGGAGAGATTACATTTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAGGAAGAAAAAGATCCTGACCTTGAAATGTTAAAAAACCTTTCTGAAAAGTTGCATATTCGGACTGTAAACGATTTGAAGAAAGAGTCTCAAGCGATCCATGAGCTGGCGATCTCGAGCGATGGAGACCCGGGGGATGTTTTCAGAAAAGTATCATCCATTTTAAAGAAGCTGAAGGATTTTGTACAAACAGAAAACCCAGAAGTTGAAACTTCCCAAGATAAAAAAAGTATCATCGTTGAACACAAATCTCCTGTCATCCCGGACGATTTCAGATGCCCTATATCTCTTGAAATGATGAGGGATCCCGTCATTGTCTCGACCGGGCAGGTGAACGCCCAACGTGACTGCTGCAATGCTAGTACTTATGAGAGATCCTGCATTCAGAAATGGTTGGATTCAGGGCACATAACCTGTCCAAAATCTCAGCAGGTTTTAGTCCGTACAGCCTTAACCCCAAATTACGTTTTGAAGAGCCTGATTGCTTTGTGGTGTGATAACAATGGCGTTGAACTGCCAAGCAAGCAAGGTAGCTGTGTAAATAAGAAACCTGGAAACAGTATTTCAGACTGCGATCTGGCGGCCATCGATGCCTTACTGGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTACAGGTGAGCTCCGGTTACTAGCAAAGAGGAATTCGGATAACCGAATCTGTATTGCCGAGGCAGGAGCCATTCCATTCCTTGTCGAACTATTATCCTCAAATGATACTAGGACCAAGGAGCATGCAGTTACAGCAATGTTGAATCTTTCAATCAACGATGGTAATAAAAGAACGATAGTCGATTTACGAGCCATACCTGCCATAGTAGAAGTGTTGAAGAATGGCAGTATGGAAGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATCGACGAGAACAAGGTTGCGATCGGAGCAGCTGGGGCAATTCCTGCTCTTATCAGTTTGCTTTGTGAAGGTACACCCAGAGGGAAGAAGGATGCAGCCGCTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAGTAAGAGCAGGCATTGTTAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTTTGGCCATTCTTGCAACTCACCATGAAGGGAAGATGGCAATAAGGCAAACTAAGCCGACAGCGATTCTTTTAGAGTTCATCAGAACCGGTTCTCCACGAAATCAGGAGAATGCTGCTGCTGTGTTGTGGTCGCTTTGCAGTACTGATTTTGAGCAGTTGAAGGTAGCTAGGGAACATGGTGCAGAAGTGGCATTAAAGGAAGTATCTGAGAATGGGACAGAAAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACTCTTTGATGAACCATCTGCTAATCTATAA 1899 44.66 MGRSEKELKDLVVAQLPEFVREISELPECNGVCKKMYGELIRRVKLLSPIELGLDVLKGLELLKTALDSAMELLRSVNRGSKLYQALQLEKIVLEFQHKTQDIAAALSKLPIDELGISDEVREQTELVQSQFKRAKERLHLADAQLDKDLAILQEEKDPDLEMLKNLSEKLHIRTVNDLKKESQAIHELAISSDGDPGDVFRKVSSILKKLKDFVQTENPEVETSQDKKSIIVEHKSPVIPDDFRCPISLEMMRDPVIVSTGQVNAQRDCCNASTYERSCIQKWLDSGHITCPKSQQVLVRTALTPNYVLKSLIALWCDNNGVELPSKQGSCVNKKPGNSISDCDLAAIDALLVKLVNGSPEQKRSATGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTKEHAVTAMLNLSINDGNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAAAAIFNLSIYQGNKARAVRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMAIRQTKPTAILLEFIRTGSPRNQENAAAVLWSLCSTDFEQLKVAREHGAEVALKEVSENGTERAKRKAGSILELFQLFDEPSANL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7459501 7462109 + CmoCh04G014540.1 Cmo04g01454 380429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01454 632 SMART Ubox_2 243 317 IPR003613 GO:0004842|GO:0016567
Cmo04g01454 632 CDD RING-Ubox_PUB 244 297 IPR045210 -
Cmo04g01454 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 324 IPR013083 -
Cmo04g01454 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Cmo04g01454 632 ProSiteProfiles U-box domain profile. 239 324 IPR003613 GO:0004842|GO:0016567
Cmo04g01454 632 SUPERFAMILY RING/U-box 240 325 - -
Cmo04g01454 632 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 13 624 - -
Cmo04g01454 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515
Cmo04g01454 632 Gene3D - 527 628 IPR011989 -
Cmo04g01454 632 Pfam U-box domain 240 321 IPR003613 GO:0004842|GO:0016567
Cmo04g01454 632 SMART arm_5 542 582 IPR000225 GO:0005515
Cmo04g01454 632 SMART arm_5 501 541 IPR000225 GO:0005515
Cmo04g01454 632 SMART arm_5 419 459 IPR000225 GO:0005515
Cmo04g01454 632 SMART arm_5 378 418 IPR000225 GO:0005515
Cmo04g01454 632 SMART arm_5 460 500 IPR000225 GO:0005515
Cmo04g01454 632 Pfam Armadillo/beta-catenin-like repeat 378 417 IPR000225 GO:0005515
Cmo04g01454 632 Pfam Armadillo/beta-catenin-like repeat 419 458 IPR000225 GO:0005515
Cmo04g01454 632 Pfam Armadillo/beta-catenin-like repeat 461 499 IPR000225 GO:0005515
Cmo04g01454 632 PANTHER U BOX DOMAIN-CONTAINING 13 624 - -
Cmo04g01454 632 Gene3D - 425 526 IPR011989 -
Cmo04g01454 632 Gene3D - 334 424 IPR011989 -
Cmo04g01454 632 SUPERFAMILY ARM repeat 345 622 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01454 Cmo-Chr4:7459501 Cmo13g00131 Cmo-Chr13:747202 0 dispersed
Cmo18g00911 Cmo-Chr18:10298233 Cmo04g01454 Cmo-Chr4:7459501 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01454 - - csv:101221065 1001.5