Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01465 ATGTTTTTATTCCTGTTTCAGAAACCAGATTTGTTCCGTCGATTAATACCGCAGTACAGCCCCGCCAGAAACATCCTCAAATTCCTCGCTCTACCTTCGAGGATGTTTCTTGTTCTTACCATTCTCTTGTTATGGATGTCTGGTTCTATCTTTTGTGTCGCTTCTGCTGCTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGACTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCTGTACGGAGAAGACAAATGCTGTCCGAATCGAAGGATCAAACTTCCTCTTGCCTCACCGGCAACCCCATCGACGATTGCTGGCGGTGCGACCCAAATTGGGCGGCGAACCGGCAGCGACTAGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCATGGGTGGCAAAGGCGGAAAAATCTACATCGTTACCGACTCGTCGGATTCGGATCCGACGAACCCCACTCCGGGAACTCTCCGCCACGCTGTGATCCAATTCGAACCCGTGTGGATCATCTTCTCAGCCGACATGAACATCAAGCTCAAATACGAACTTATCATCAACAACTTCAAAACCATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATCCATTCCGTGTCCAATATCATCATCCACAACATCCACGTGCACCACTGCAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCGAGCCATGTGGGGCATTGGGGGCTGTCGGACGGAGATGGGATATCGATATTCAGCTCGAGGAAGATTTGGATCGACCATTGCTCGCTTTCATATTGCAAAGATGGGCTAATAGATGCAACAATGGGATCGACGGGGATAACAATATCAAACAGCTACTTCTCGCACCATGACAAGGTGATGCTGTTGGGGCACGACGACAAGTACGCGCAGGACTCAGGGATGCAAGTCACCATAGCGTTCAACCACTTCGGCGAGGCGCTGAGCCAACGCATGCCGCGTTGTAGGTATGGCTACATTCATGTCGTCAACAATGACTTCACCGCTTGGGAAATGTATGCCATTGGCGGCAGTGCCCGACCAACCATTAACAGTCAGGGTAACCGTTACACCGCGCCGGTGGACCCTAATGCCAAAGAGGTGACGAAACGTTTAGACACGGCGGAGACGGAGTGGGCGGCGTGGAATTGGCGGTCGGAGGGTGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTCGAGCCTAAGTCGGTGGCTCTCATCAATCAGCTCACTATGAACGCCGGCGTTTTCGGCGCCCCCAGGTATAATGTTGGTCAAGGAATTGTATATCCAGGGTTCAACGGTAGCAACCATGGCGATGGCGATGGCGATGGCGGAAACACTGCCATAAGTAACAGTCCAATATATGGAAATGGCGGTGGTAGCAATGATGAATACTACGGAATGGTATTTAAAGGGCCATGGTTCATGATGTTCGCATCCTTCCTGATTATGTCCATGGCCGGCATCCCTTACATGTTCGGCCTCTACTCCGGCACCATCAAATCTGTATTGGGTTACGACCAAACCACCCTTAATTTCATCAGCTTCTTCAAAGATGTCGGCACCACCGTCGGTGTCTTGGCCGGCTTAATCAACGAAGTAACCCCACCATGGTCCATTCTTGCCATGGGAGCTCTTCTCAATTTCTTCGGTTACTTCATGATTTGGCTCTCTGTTTCCGAGAAGATCCCCACCCATGTCTGGCTCATGTGCTTATATATCTGTGTTGGAGCCAACGCTACCACGTTCGCTAACACCGGCGCCCTCGTCACCTGCGTTAAGAATTACCCGCAACGGCGTGGCGTCGTCATCGGAATTCTTAAGGGCTACATGGGGTTGAGTGGGGCCATTGTTACGCAGCTCTACCATGCGATTTATGGGAAAGATGAAAAGTCGTTGATTTTGTTGTTGGGTTGGTTGCCGGCGGTGATTTCGTTTATTTTCTTGCCGACGGTGCGGCGGATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGTTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGCGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGTTTGAATAAGCCACCGGTGGTTGAGAATGGCCTTTCCTACACGCCGGGGACGCCGGCGTTGAAGAACACGACACCAATGGCACTCCTCCCGAAGAAACCAAAGGAGACAGAACCAGCAAGCAGCACCAAAATTCAATGGTGGAAAAACGTGTTCAGTCCGCCGGAAAGAGGAGAAGACTGGACAATTCTCCAAGCTCTGTTCAGCGTCGACATGTTCCTCCTCTTTCTCGCCACCGCGTGCGGCGTCGGCGGGACACTAACCGCCATCGACAACCTCGGACAAATCGGACAGTCACAAGATTACCCAAAGAAAAGCATAAGCACATTCGTGACGCTCGTCAGCATCTGGAATTACCTCGGCAGAGTAATGGCCGGATTCCTCTCCGAACATCTGCTAATCAAATACAGATTCCCTCGTACTTCAATGCTCACAATCGTCCTTCTTCTTTCCTGCATCGCCCATCTTCTGATCGCCTTCAACCCGAGCGGCGGCCTCTACATTGCCTCTGTTTTAACCGGATTCTGCTACGGCGCACAGTGGCCTCTGCTTTTCGCCATCATCTCCGAGATTTTTGGGCTAAAATATTACGCGACTCTGTATAATTTCGGGTCGGTGGCGAGCCCTGTGGGGCTTTATTTGCTGAATGTGAATGTGGCGGGGTATTTGTACGACAAGGAGGCGAAGAAGCAGCTGGCGGCGACGGGGAGGATAAGGAAAACAGGGGAGGAGTTGAATTGTAATGGGACGTTAGCCTCTTAA 3024 51.82 MFLFLFQKPDLFRRLIPQYSPARNILKFLALPSRMFLVLTILLLWMSGSIFCVASAASFNLTLPHQHPDPDSVADELQRTVNASVRRRQMLSESKDQTSSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSDPTNPTPGTLRHAVIQFEPVWIIFSADMNIKLKYELIINNFKTIDGRGANVHITGGGCITIHSVSNIIIHNIHVHHCKPSGNANIRSTPSHVGHWGLSDGDGISIFSSRKIWIDHCSLSYCKDGLIDATMGSTGITISNSYFSHHDKVMLLGHDDKYAQDSGMQVTIAFNHFGEALSQRMPRCRYGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTKRLDTAETEWAAWNWRSEGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVFGAPRYNVGQGIVYPGFNGSNHGDGDGDGGNTAISNSPIYGNGGGSNDEYYGMVFKGPWFMMFASFLIMSMAGIPYMFGLYSGTIKSVLGYDQTTLNFISFFKDVGTTVGVLAGLINEVTPPWSILAMGALLNFFGYFMIWLSVSEKIPTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAVISFIFLPTVRRMKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAAVTLLLLLPIVVVVAQEFKAWRRLNKPPVVENGLSYTPGTPALKNTTPMALLPKKPKETEPASSTKIQWWKNVFSPPERGEDWTILQALFSVDMFLLFLATACGVGGTLTAIDNLGQIGQSQDYPKKSISTFVTLVSIWNYLGRVMAGFLSEHLLIKYRFPRTSMLTIVLLLSCIAHLLIAFNPSGGLYIASVLTGFCYGAQWPLLFAIISEIFGLKYYATLYNFGSVASPVGLYLLNVNVAGYLYDKEAKKQLAATGRIRKTGEELNCNGTLAS 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7492582 7499522 - CmoCh04G014650.1 Cmo04g01465 380440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01465 1007 SUPERFAMILY Pectin lyase-like 99 444 IPR011050 -
Cmo04g01465 1007 CDD MFS_Mch1p_like 501 982 - -
Cmo04g01465 1007 SUPERFAMILY MFS general substrate transporter 702 979 IPR036259 -
Cmo04g01465 1007 SMART amb_all 179 376 IPR002022 -
Cmo04g01465 1007 Pfam Major Facilitator Superfamily 835 978 IPR011701 GO:0022857|GO:0055085
Cmo04g01465 1007 Pfam Pectate lyase 189 367 IPR002022 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cmo04g01465 1007 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Cmo04g01465 1007 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 494 1004 - -
Cmo04g01465 1007 SUPERFAMILY MFS general substrate transporter 495 688 IPR036259 -
Cmo04g01465 1007 PANTHER MFS TRANSPORTER 494 1004 - -
Cmo04g01465 1007 Gene3D MFS general substrate transporter like domains 778 986 IPR036259 -
Cmo04g01465 1007 Gene3D - 104 446 IPR012334 -
Cmo04g01465 1007 Pfam Nodulin-like 502 746 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01201 Cmo-Chr3:9366781 Cmo04g01465 Cmo-Chr4:7492582 0 dispersed
Cmo04g01465 Cmo-Chr4:7492582 Cmo15g00510 Cmo-Chr15:2350179 0 dispersed
Cmo04g01464 Cmo-Chr4:7489179 Cmo04g01465 Cmo-Chr4:7492582 0 tandem
Cmo18g00915 Cmo-Chr18:10329109 Cmo04g01465 Cmo-Chr4:7492582 0 wgd
Cmo04g01465 Cmo-Chr4:7492582 Cmo04g02667 Cmo-Chr4:19398147 1.91E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01465 - K01728 csv:101205503 905.205