Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01478 ATGAACTGTCTTCAAAACCTTTCAATGTCTGTTCTGAAATCATCATCTTTTCCGTTCCAGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCCGCAATCTGGTGATAAGGAACTTTGCGGATCTACACCGACGTTTTACCGTGAAGGCAGTATCTGGCTCTACATCAAGTGCCGAAATGAGTGGAGCTGAAGTTGATGATGCCGTGGAAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGGGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCGTGCCTACAGACTCCAGAGGATGTTGACAAGCTTCGCAGCATTGGAGTAAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACGTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTCGACCTACGGCTAAGGTTACCAGCTGTTGTAAGTAAATTGCATAAAGCCATAAAACGAAATGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGATGGCATACATGTTCTGGGTTCAAGGCTACACACTCAATGAGGCTTTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACGGCCGATATTCTTTCAGGATTTAAAAACAAGCCTGTCACTTTATCATGGGAGAATGACCAATGCTCAACTGTAGAAGTATCTGGGCTTGATATTGGATGGGGCCAGGAAGGACGATACGAATACAAGTATATTATTGATGGTGTATGGACGTGCAACGAAAACGAGCCGGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTGGTTGAAGATGAGGATCCAGGTAGTGATAGAACCATGCTTCGGGCAAGATTAACTGGAGATGAACCTGAACTCACGACCGAAGAAAGAAGCAAAATAATACAATTTCTAGAAGATTGCCCAGATGAAAATTGA 1095 42.28 MNCLQNLSMSVLKSSSFPFQSFKCRQRKPEFQLRNLVIRNFADLHRRFTVKAVSGSTSSAEMSGAEVDDAVEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAIKRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYTLNEALELLLSKRSCFPKIDAIKSATADILSGFKNKPVTLSWENDQCSTVEVSGLDIGWGQEGRYEYKYIIDGVWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRTMLRARLTGDEPELTTEERSKIIQFLEDCPDEN 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7568104 7574635 - CmoCh04G014780.1 Cmo04g01478 380453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01478 364 CDD DSP_laforin-like 100 247 IPR045204 GO:0019203|GO:0046838
Cmo04g01478 364 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 284 - -
Cmo04g01478 364 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 284 363 - -
Cmo04g01478 364 SUPERFAMILY E set domains 259 321 IPR014756 -
Cmo04g01478 364 ProSiteProfiles Dual specificity protein phosphatase domain profile. 101 258 IPR020422 GO:0006470|GO:0008138
Cmo04g01478 364 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 243 IPR029021 -
Cmo04g01478 364 Gene3D Immunoglobulins 283 326 IPR013783 -
Cmo04g01478 364 Gene3D Protein tyrosine phosphatase superfamily 90 280 IPR029021 -
Cmo04g01478 364 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 178 236 IPR000387 GO:0016311|GO:0016791
Cmo04g01478 364 Pfam Glycogen recognition site of AMP-activated protein kinase 285 324 IPR032640 -
Cmo04g01478 364 SMART dsp_5 101 251 IPR020422 GO:0006470|GO:0008138
Cmo04g01478 364 CDD E_set_AMPKbeta_like_N 260 321 - -
Cmo04g01478 364 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 284 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cmo04g01478 364 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 284 363 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cmo04g01478 364 Pfam Dual specificity phosphatase, catalytic domain 157 239 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01478 Cmo-Chr4:7568104 Cmo11g01690 Cmo-Chr11:11970172 3.87E-28 dispersed
Cmo18g00927 Cmo-Chr18:10439013 Cmo04g01478 Cmo-Chr4:7568104 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01478 - - csv:101212390 654.825