Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01480 ATGTTGGCAATGGAGAAGGATTTTGATGCTAAGTTGATGATTCAGGGCAACGGTTCTAATGGCGCCAATGTTCCGAGATCCAAGAGCTTTTCCTTTCGTGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGGAAGATATATGGTGTTGGTTCATATTCCAAGGTTGTAAGGGCGAAGAAGAAGGACACAGGAACTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTTCTTGATCAGTTGGATCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGAAGAAGCTCGGTTTTATACGGCCGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCGATGGTCGATAGCCGAATTACGGTTCTTCCAAATGCAGCATCGGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCTTCCCCTGCAACTTTTGGAAATGACCTTTGGGCGCTCGGGTGCACCGTGTACCAGATGCTGTCGGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCGAGCTATTTTTCGGAGCAAGCCAGGGATCTCATCGACCACCTATTGGATTTAGATCCGATCAAGAGACCGGGCGCCGGAGCTGAGGGCTATGCATCCCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAACACAAACCCCTCCCAGGCTTGCTTTAGAAGCTACGACCAATTCAAACGAGACCGACGATGGCTCCGAGTCCTCTTGGAATCCTTCACATCTTGGTGACGGTGCATCGAGACAAAACGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGATCAAATCATATTACTCGACTTGCATCGATAGACTCCTTCGATTCAAAATGGCAACAATTCCTTGATCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAAATTCAAAAGCTATCAAGCAAAAAGGTTCAGCTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTTATTGTGAAGGGGAATATCATTTGGTCTGACAATCCAAATGATCTCAACATTCAAGTGACCAGTCCTTCAAATTTCAAGATCTGCACACCAAAAAAGATTGCCTCTTTTGAGGACGTGAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1470 43.2 MLAMEKDFDAKLMIQGNGSNGANVPRSKSFSFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEEEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKNHPFFEGVDWKNIRTQTPPRLALEATTNSNETDDGSESSWNPSHLGDGASRQNDGNAGSASTSEGSNHITRLASIDSFDSKWQQFLDPGESVLMISMVKKIQKLSSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSNFKICTPKKIASFEDVKQRAWQWKKAIEGLQNR 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7585406 7589860 + CmoCh04G014800.1 Cmo04g01480 380455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01480 489 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01480 489 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cmo04g01480 489 MobiDBLite consensus disorder prediction 331 372 - -
Cmo04g01480 489 CDD STKc_PDK1 42 311 IPR039046 GO:0004674
Cmo04g01480 489 SUPERFAMILY Protein kinase-like (PK-like) 41 366 IPR011009 -
Cmo04g01480 489 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cmo04g01480 489 Gene3D - 357 489 IPR011993 -
Cmo04g01480 489 Pfam PH domain 386 488 IPR033931 -
Cmo04g01480 489 SUPERFAMILY PH domain-like 305 488 - -
Cmo04g01480 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Cmo04g01480 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 485 - -
Cmo04g01480 489 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 21 485 - -
Cmo04g01480 489 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01480 489 Pfam Protein kinase domain 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01480 Cmo-Chr4:7585406 Cmo11g00131 Cmo-Chr11:656883 5.31E-61 dispersed
Cmo18g00930 Cmo-Chr18:10466107 Cmo04g01480 Cmo-Chr4:7585406 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74274 PF00069 Pkinase 9.30E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01480 K06276 - csv:101212874 911.368