Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01491 ATGTCCGACAAACACACACACCCAGATCTCCGCCACCTCATGGCCAACGAACCCAACTTTCCGGCCACCGCACAAACCCTAGACTCCTTCTTCCACCACCACACTCACCTGACACGTGGCTTCTCTCCACCGCCACCACCCAAGTTCCAGCCTATCCCGCTCGTCCTAACCGATCCCGCTACTTTTCCCAACGGCCAGCTTCACTTTGGCTGTTCCGATAACTCCACAACAACTGCAGGCGGCGGTGGCGCCGCATCGTCCGCTCCATTTTCTCGGCGGAATAAGGCCGTGGATGGTGAATGGCGTCCCTATGGAAACGACGCCGTTGGGGTAAGTAATGGAGCTAACAGTAGATGGCCGAGACAGGAAACTCTCACTCTTCTTGAGATCAGATCTCGTCTTGATCCCAAGTTTAAAGAGAGTAATCAGAAAGGTCCTCTTTGGGATCAGGTTTCTAGGATGATGGCGGAGGAATACGGGTACAAAAGAAGTGGGAGAAAATGCAAAGAGAAGTTCGACAATTTATACAAATACTACAAGAAAACAAAGGAAGGTAAATCGGGGAGGCACGACGGGAAGCACTACAGATTCTTCCGGCAACTCGAAGCCATTTACGGCGACTGTAACCACCAATTATCATCCCCCGTTACCGGCGGAGAGAATCACGTAGAAGCGGGGGGAATGAGTCAAAGCTTTTCAATGTCATCTGATTTCGAAACGTCGTCGTCAGGGAACTACCACGACGACGATCTGTCGGCCATAGCGTTTATGATGAATCAGAGGAGGGTGGAGAAAGGGAGAGAAGACGACATGTCGAAAGGGGAGGGTGTAGGGTGGAGAGAGGAGGTAGAGAGAATGGTGGATTCGAAGGTGAGGAGATTAATGGAAGTGCAGGAGAATTGGATGGAGAAGATTATAGCGAGCGTTGAAGATGGTGAAAAGGAAAGAATTGTTAAAGAGGAAGAATGGAGGAAGAAAGAGGTGGCTAGGTTTGACCGTGAAATGCTTGAGTTTTGTGCGAGGGAGAGAGCTTGGGTTCGAACCCGAGAAGCTGCTTTCATGGAGATTATCAACAATTTTTCTGGTAAAGGATAA 1095 49.86 MSDKHTHPDLRHLMANEPNFPATAQTLDSFFHHHTHLTRGFSPPPPPKFQPIPLVLTDPATFPNGQLHFGCSDNSTTTAGGGGAASSAPFSRRNKAVDGEWRPYGNDAVGVSNGANSRWPRQETLTLLEIRSRLDPKFKESNQKGPLWDQVSRMMAEEYGYKRSGRKCKEKFDNLYKYYKKTKEGKSGRHDGKHYRFFRQLEAIYGDCNHQLSSPVTGGENHVEAGGMSQSFSMSSDFETSSSGNYHDDDLSAIAFMMNQRRVEKGREDDMSKGEGVGWREEVERMVDSKVRRLMEVQENWMEKIIASVEDGEKERIVKEEEWRKKEVARFDREMLEFCARERAWVRTREAAFMEIINNFSGKG 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7646202 7648419 + CmoCh04G014910.1 Cmo04g01491 380466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01491 364 Pfam Myb/SANT-like DNA-binding domain 117 204 IPR044822 -
Cmo04g01491 364 PANTHER - 12 362 - -
Cmo04g01491 364 Coils Coil 280 300 - -
Cmo04g01491 364 Gene3D - 119 181 - -
Cmo04g01491 364 ProSiteProfiles Myb-like domain profile. 111 176 IPR001005 -
Cmo04g01491 364 CDD GT1 117 183 - -
Cmo04g01491 364 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 12 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01491 Cmo-Chr4:7646202 Cmo14g00274 Cmo-Chr14:1239386 1.88E-83 dispersed
Cmo14g00054 Cmo-Chr14:270457 Cmo04g01491 Cmo-Chr4:7646202 6.59E-14 dispersed
Cmo18g00936 Cmo-Chr18:10531114 Cmo04g01491 Cmo-Chr4:7646202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9629 PF13837 Myb_DNA-bind_4 3.00E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01491 - - cmo:103489406 537.724