Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01496 ATGGAGCAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTGGTTTACAAAGCACGCGATCGCGTCACAAATGAGACTATTGCTCTGAAGAAGATCCGCTTGGAGCAGGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTGCAAGATGTAGTGCACAGTGAGAAGCGCCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAGGGATCCACGCCAAGTGAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGTCATTCACATAGAGTTCTTCATCGAGATCTAAAACCCCAAAATCTACTGATAGATCGTCGTACCAATGCCCTGAAGCTCGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTACTCCACCCCTGTGGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCATTATTCCCTGGAGACTCTGAGATTGATGAGCTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCAAAGGACTTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACCGCCAGGAGTGCCCTTGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA 885 44.75 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFARDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7659026 7663665 + CmoCh04G014960.1 Cmo04g01496 380471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01496 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Cmo04g01496 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Cmo04g01496 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Cmo04g01496 294 PANTHER - 3 291 - -
Cmo04g01496 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01496 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01496 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Cmo04g01496 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Cmo04g01496 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cmo04g01496 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cmo04g01496 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02100 Cmo-Chr1:14539206 Cmo04g01496 Cmo-Chr4:7659026 1.16E-119 dispersed
Cmo04g01496 Cmo-Chr4:7659026 Cmo07g01231 Cmo-Chr7:6716325 1.40E-112 dispersed
Cmo08g00151 Cmo-Chr8:871594 Cmo04g01496 Cmo-Chr4:7659026 1.64E-08 dispersed
Cmo18g00940 Cmo-Chr18:10556806 Cmo04g01496 Cmo-Chr4:7659026 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74275 PF00069 Pkinase 1.40E-80 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01496 K02206 - csv:101217311 589.341