Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01529 ATGAGAATAATCTCTCCGCCTGTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCTCGTCTTCTTCCTCCTCCTGCATCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCTCCTCACCGGCCGCAATCTGAGAAAACCACAGCCAAACGACGGAGGAGGAATCAAGATGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGATCCAACAACGCCTCTCCCGCTCGGCGGAGCTCCATTTACAGAGGAGTTACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTCTGGGACAAGAGTTCATGGAATAACATTCAGAACAAAAAGGGAAGGCAAGGAGCCTACGACAACGAGGAAGCCGCTGCTCGAACTTATGACCTTGCTGCCCTCAAATATTGGGGCCCCGGGACCACGCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCCAAGGAGGAATATTTGGCGTCGTTACGGCGGCAGAGCAGTGGTTTTTCCAGAGGCGTTTCCAAGTACCGCGGCGTTGCCCGGCACCACCACAACGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTCTACTTGGGAACTTACAATACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCCATTGAGTACAGAGGAGCCAATGCAGTCACCAACTTCGACATTAGCAATTACATTGGGAGGTTACAGAATAAATCATCACCAGATGACCCCAGTTGCTCCCCTGCTTCTTCTCACGGCGAAGTAGTACAACAACAACAACACGACCAAGATCAGCAGCGGCAACAACAACAACAAATTGCATTCTCGAGCCCGCCCGACCTCCAGTTTTCGATCGAGAATAACCCCTCTATGGTTGTCATGGATGAACCACCAACACAAGACGACCATGATCTCCATTGGTCTTTCTTAGACACGGGATTATTCGTGCACGTCCCTGACCTCCCACTTGAGAAATCGAGCGAGTTAGCTGACTTATACTTTGACGAGATCAGGTTTGAGGACGATATTGGGTTGATGTTCGAAGCAAGCTTAGAGAACAACAAGAACTGCGAAGGTAACGATGAAGATGATGATAACGTTGGGAAGAAGGAGGTCAACAACTTTCCCTTCATTTTCCTTCTCTTCCTCTCTCTCGGCCTCGCCGGAGCTTCCGATTCTGCTCCGCCGTCCGCCTTCCTCTGTAAATCCACTCTCTATCCTAAGCTTTGCCGTTCCATTCTCTCCTCCATCCGATTCTCCCCCTCCGATCCATACGGCTACGGAAAATTCTCCGTCAAGAAGTGTCTCAAACAGGCGATCAAAATGTCGAGCGTTATCGGCGAGTATCTCAACCGAGGAGGCGATTCGAGGTTGAATCGGCAGGAGGTTGGCGCTCTGGAAGACTGCAGAGAGCTTTCCGATTCGAATGTGGAGTTTCTCCAGTCGATTGATGGCGTATTGGAGGCAGCGGAGGGCGTTGATGAGGAACTGGTGGAGCGTATTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGACGGATTGGTGGAGTCGAGGAGTAGTTTGGGGAATGCGCTATCGGCACCGCTATTGAGCGCGGGGGAACTGTACAGTGTATCGTTAGGACTGGTTAAGAACTCGCTGTCACGGCGGTGGAAGAAGCGGAGGCAGAAGGGAGACGGCGAGGGAGGGAATTTCCCGGCGGCTGCGCAGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATATGAGTTCGTGTAACCAATCCACAAAGTGTTGGGGAAGGAAGCGCTTGTTGACTGATTTGGGCACCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACAGGTGCTGACAACTTCACATCAATTGGCGATGCAATTTCATTCGCTCCCAACAATTCAATGCTTCAAGATGGCTACTTTGTTATCTATGTTAGACAAGGATACTACGACGAATACGTTATCGTCCCCAAGTACAAAACCAACATAATGCTCATCGGAGATGGCATTAACCGAACCGTCATCACGGGGAACCATAATGTCGTCGATGGTTGGACGACTTACAATTCCTCTACCTTTACTGTTTATGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGAGCAGAGAAGCACCAAGCAGTGGCAGTGAGGAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGCTTTGAGGGATATCAAGACACTCTTTATGTACATTCCATGAGGCAATTCTACAGGGAATGCGACGTTTATGGCACTGTCGACTTCATTTTTGGCAACGCTGCTGCAGTTTTCCAGCAATGTAATCTATACGCTAGAAAGCCACTCCCCAACCAAAAGAACGCCTTCACGGCGCAAGGCCGAACCGATCCAAACCAAAGCACGGGCATCTCGATCCACAACTGCACCATCAAGGCTGCCCCAGAGTGGGTGATGGATTTGAATGCGACGACAACAACGACGATGAACTATCTCGGGCGGCCGTGGAAGCCGTTCTCAAGGACGGTGTATATGCAGTCTTACATTGGGGATTTGATCAGCCCAGTGGGGTGGCTGGAGTGGAATGGAACGGTGGGATTGGACACATTGTATTATGGGGAGTTTGAGAATTATGGAGCAGGAGCTAACACGAGCTCGAGGGTCAATTGGGGTGGCCATAGCTTGATGAATATCACAGAGGCTATGAATTTTACCGTCTATAACTTCACCATGGGAGATACTTGGCTGCCCTATACAGATATCCCCTTCTCTGGAGGTTTGCTATGA 2874 49.72 MRIISPPVSSSSSSSSSSSSSSSSSSSSSSSSCIGSDSGIHNNNLAAPHRPQSEKTTAKRRRRNQDETKCQIHNHNANGSNNASPARRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLQNKSSPDDPSCSPASSHGEVVQQQQHDQDQQRQQQQQIAFSSPPDLQFSIENNPSMVVMDEPPTQDDHDLHWSFLDTGLFVHVPDLPLEKSSELADLYFDEIRFEDDIGLMFEASLENNKNCEGNDEDDDNVGKKEVNNFPFIFLLFLSLGLAGASDSAPPSAFLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVIGEYLNRGGDSRLNRQEVGALEDCRELSDSNVEFLQSIDGVLEAAEGVDEELVERIESILSAIVTNGQTCIDGLVESRSSLGNALSAPLLSAGELYSVSLGLVKNSLSRRWKKRRQKGDGEGGNFPAAAQSREPLNTLIKGLHMSSCNQSTKCWGRKRLLTDLGTTGILINNTVVVSSTGADNFTSIGDAISFAPNNSMLQDGYFVIYVRQGYYDEYVIVPKYKTNIMLIGDGINRTVITGNHNVVDGWTTYNSSTFTVYGDGFVAIDMTFRNTAGAEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSMRQFYRECDVYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQSTGISIHNCTIKAAPEWVMDLNATTTTTMNYLGRPWKPFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFENYGAGANTSSRVNWGGHSLMNITEAMNFTVYNFTMGDTWLPYTDIPFSGGLL 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7814003 7822125 - CmoCh04G015290.1 Cmo04g01529 380504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01529 957 CDD PMEI-like_3 421 571 - -
Cmo04g01529 957 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 397 956 - -
Cmo04g01529 957 Gene3D Invertase/pectin methylesterase inhibitor family protein 420 572 IPR035513 -
Cmo04g01529 957 ProSitePatterns Pectinesterase signature 2. 786 795 IPR033131 -
Cmo04g01529 957 MobiDBLite consensus disorder prediction 1 51 - -
Cmo04g01529 957 Pfam AP2 domain 91 146 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 Pfam AP2 domain 189 240 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 CDD AP2 189 250 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 Gene3D AP2/ERF domain 189 250 IPR036955 GO:0003700|GO:0006355
Cmo04g01529 957 Gene3D AP2/ERF domain 91 156 IPR036955 GO:0003700|GO:0006355
Cmo04g01529 957 SMART PMEI_2 412 568 IPR006501 GO:0004857
Cmo04g01529 957 SMART rav1_2 190 254 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 SMART rav1_2 91 160 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 MobiDBLite consensus disorder prediction 256 296 - -
Cmo04g01529 957 SUPERFAMILY Pectin lyase-like 635 955 IPR011050 -
Cmo04g01529 957 Pfam Plant invertase/pectin methylesterase inhibitor 421 565 IPR006501 GO:0004857
Cmo04g01529 957 Gene3D - 634 956 IPR012334 -
Cmo04g01529 957 Pfam Pectinesterase 640 942 IPR000070 GO:0030599|GO:0042545
Cmo04g01529 957 PRINTS Ethylene responsive element binding protein signature 230 250 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Cmo04g01529 957 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 421 571 IPR035513 -
Cmo04g01529 957 SUPERFAMILY DNA-binding domain 189 250 IPR016177 GO:0003677
Cmo04g01529 957 PANTHER PECTINESTERASE 397 956 - -
Cmo04g01529 957 SUPERFAMILY DNA-binding domain 90 156 IPR016177 GO:0003677
Cmo04g01529 957 MobiDBLite consensus disorder prediction 1 88 - -
Cmo04g01529 957 ProSiteProfiles AP2/ERF domain profile. 91 154 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 CDD AP2 90 155 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 ProSiteProfiles AP2/ERF domain profile. 190 248 IPR001471 GO:0003700|GO:0006355
Cmo04g01529 957 MobiDBLite consensus disorder prediction 71 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01529 Cmo-Chr4:7814003 Cmo17g01038 Cmo-Chr17:8815401 8.86E-171 dispersed
Cmo06g00924 Cmo-Chr6:6686532 Cmo04g01529 Cmo-Chr4:7814003 1.06E-44 dispersed
Cmo14g00544 Cmo-Chr14:2761822 Cmo04g01529 Cmo-Chr4:7814003 4.50E-55 dispersed
Cmo14g00612 Cmo-Chr14:3097890 Cmo04g01529 Cmo-Chr4:7814003 2.28E-83 dispersed
Cmo11g01062 Cmo-Chr11:5906644 Cmo04g01529 Cmo-Chr4:7814003 2.84E-84 transposed
Cmo18g00973 Cmo-Chr18:10751404 Cmo04g01529 Cmo-Chr4:7814003 4.31E-162 transposed
Cmo18g00972 Cmo-Chr18:10744845 Cmo04g01529 Cmo-Chr4:7814003 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9631 PF01095 Pectinesterase 7.00E-133 CL0268 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01529 K01051 - csv:101206112 975.311