Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01542 ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCATGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCATGGTGGCGTCGGCGATGAAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGACGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGCTTGGTGGAGTCGAAATCGATAATGGATGGAGGTATCGGTCGACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGATTGGCGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTCTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGCTTGGATCTGAAAAATTCAAAGAGGTTGCGAAACACTTTTCGTGAAGATGTCAACAACCTGGTTCAGAGGAGGCGTAGAGAAACACTTTCTTGGCCATCGAAAATTGCAGAGGGATTGCTGCTTAGCGGCGATGCTGCCTTGGCTTCGACGAGAATATGTCTAACCCATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATGTCTAACCCCAAGAAGTAGAAGGGGAAACCTAGAGCAAGGGACAAAGACAATGTTGAAGCCGAAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGTGAGAAGGGCAGCTGGAAGAGTCGCCACATTGGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCGGCGGCAACTTGGTTGGCGAAGATGCCAGTGCGGCGCCCAGATTCCAAAGAGTATGGCGAAGGATGATTTGGAGGTCAAAAGGGTGGAGCCGAAGAATAATCAATCGGCTCTGCATGTGACAGCCATGACGACTGCCTCTGCGGCATCAAAGACAACAGTGGTGGTGGAGAAGAATAGTAGAAGATTTCAAAAGCCATTGAAAAGAAAGGATCTAGCAATATCAACACAGTTTTTGCCTGCCTCCCATCTGGTGGGCTCTGCTCCGAGAACTGTCGCCGTCGGCCGATTGACGGAGGAGATGTGCAGCGAAGTCAAGGAAGAAACATTCGACAAAGCCACAGCGGCGGTCGAAGAGCTATATCACATCAGAGACACCTTTTTTCCTGTAAATTCCGATGACAAACTTTCCAAATTACGGGAGCTATCGGATCTTGCTGTCAAGATCCTCGATTCCATTTCTCCAGAACAAAGGAAATCACCTTTGCAGCGAGCTATGTATGAATATCTGAGAGGAAAAATGTTGGACGTATTTCCAGACTACAGAAAAGAAGCAGAGGATCATCTCTCCAAAGCTGTTAAGTTGAATCCTTCTCTTGCGGATGCCTGGCTGTGTTTAGGTAACTGCATTTGGAAGAAAGGAGATCTATCTTCAGCAAAGAACTGCTTTACTTTAGCATTAAGCAAGCGCCCAGAGAAAAAATTACTTTGTCAGCTATCAATGCTTGAAAGGAAAATGGCTCAAGGTACTGAGAATGAGGCAAAACTTGTAGAAGAAAGCATTCAACATGCAAAAGAAGCAGTTACTTTGGATGTGAAGGATGGAAACTCTTGGTATAATCTAGGAAATGCATGCCTCACAAGTTTTTTTGTTACTGGAGCGTGGGATCATAATAAGCTTCTGCAATCTTTGAAGGCATATCAAAATGCGGAAAAAGATGAAAAAATGATGTCAAATCCAGACTTGTATTTTAATTGTGCAACTGTTAACAAATATCTGGAGAACTATGAGAGGGCCCTAAGTGGATTTGAGGCTGCTGCTTTGAAGGATCCTAGTCTTAGCGCTACTAGGGAGGTCCACAAGATGGTGAATCTTCTTGACAAATTGGATAACATGTTGAAGGCACATGCTAAAACACGAAGAGTCACGTCGTTTTCATCATCAGTGGATATTGTTAGTTCTAATTCGTCATACAAGAGAGCCACTGTAGACCTTCTGTCAGAGGGTCTGAACAAATCAGTTGCAGTAATTGGGAAGGTGTTGTTCTTCATTAAGCATGATAGTCTTGCCCCACTATATTATTTGTTGTGTGATTCAAACCAAGCATGCTTTGTTGTATCTTTGTATGGTATGCGGAATGATACGGTTAAGGTAGGAGATCAGATAACATTACTGGAACCGTATTATCGCAACTTTGATTTTTCTTGGAAGGGAAAGCATTACCAGTTCAATTCAATCCGGGTCGATTTCTTAGAACAAGTTCTTGTCAATGGAAAAGCTCCGTCTGCTCACCAGGCAGTCCAGACATCAATATATGCCCAACACAAACCTTGA 2355 45.52 MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKVVKNFALISGCLEVMSTIGGAVGLVFLGGSLGICLVSLLVRHFCLDLKNSKRLRNTFREDVNNLVQRRRRETLSWPSKIAEGLLLSGDAALASTRICLTHEEGLSLSDDAALALVRICLTPRSRRGNLEQGTKTMLKPKESPHWAKEPILVRRAAGRVATLGRRSQFWREGRRQLGWRRCQCGAQIPKSMAKDDLEVKRVEPKNNQSALHVTAMTTASAASKTTVVVEKNSRRFQKPLKRKDLAISTQFLPASHLVGSAPRTVAVGRLTEEMCSEVKEETFDKATAAVEELYHIRDTFFPVNSDDKLSKLRELSDLAVKILDSISPEQRKSPLQRAMYEYLRGKMLDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSSAKNCFTLALSKRPEKKLLCQLSMLERKMAQGTENEAKLVEESIQHAKEAVTLDVKDGNSWYNLGNACLTSFFVTGAWDHNKLLQSLKAYQNAEKDEKMMSNPDLYFNCATVNKYLENYERALSGFEAAALKDPSLSATREVHKMVNLLDKLDNMLKAHAKTRRVTSFSSSVDIVSSNSSYKRATVDLLSEGLNKSVAVIGKVLFFIKHDSLAPLYYLLCDSNQACFVVSLYGMRNDTVKVGDQITLLEPYYRNFDFSWKGKHYQFNSIRVDFLEQVLVNGKAPSAHQAVQTSIYAQHKP 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7888985 7899676 + CmoCh04G015420.1 Cmo04g01542 380517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01542 784 SUPERFAMILY TPR-like 439 611 IPR011990 GO:0005515
Cmo04g01542 784 Coils Coil 514 534 - -
Cmo04g01542 784 SMART tpr_5 467 500 IPR019734 GO:0005515
Cmo04g01542 784 SMART tpr_5 587 620 IPR019734 GO:0005515
Cmo04g01542 784 Pfam Tetratricopeptide repeat protein 5 OB fold domain 665 776 IPR032076 -
Cmo04g01542 784 Gene3D Tetratricopeptide repeat domain 370 643 IPR011990 GO:0005515
Cmo04g01542 784 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 375 708 - -
Cmo04g01542 784 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 375 708 - -
Cmo04g01542 784 Coils Coil 44 64 - -
Cmo04g01542 784 ProSiteProfiles TPR repeat profile. 467 500 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01542 K24928 TTC5; tetratricopeptide repeat protein 5 - csv:101212286 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01542 Cmo-Chr4:7888985 Cmo15g01187 Cmo-Chr15:8240313 7.83E-104 dispersed
Cmo04g01542 Cmo-Chr4:7888985 Cmo09g01036 Cmo-Chr9:5556538 1.36E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g394 . . . . . . . . Cmo04g01542 . . . Car04g01530 . Sed06g1921 . Cpe01g01313 Bhi07g01245 Tan04g0785 Cmetu10g0428 . Hepe01g1144 . . Cla05g02259 Cam05g2428 Cec05g2445 Cco05g2489 Clacu05g2417 Cmu05g2284 Cre05g2402 . . . . Lsi04g00202 Csa05g02665 Chy10g01196 Cme10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003498 1 3 0 1 1 1 2 2 1 1 1 1 2 2 2 2 1 2 2 1 2 0 2 1 3 1 2 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01542 Cmo_Chr04 FPKM 5.34872 5.49721 6.236219 6.658444 12.721504 12.251204 14.328447 7.553791 8.673452 8.265971