Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01548 ATGGCCGATTCTCCATTGCTGGAATGGGTCGAGAATCGCAGGGAGACGACATGGGATGCTTTCTTTACGGAGGCGAAGACTGTTGGGCTCTTAGCGGCGCCATTGGCTGCTATCAATCTGTCTCAGTTCTTGATACAGACTGGTTCTTTGATGATTGTAGGTCATATCGATGAACTCGCTCTCTCAAGCACCGCCATAGCCATCTCTTTAGCTGCTGTTACAGGATTCAGTGTGCTTATCTGTAATCTTCAAACTATTGCTTACTCCATTTCAATGATTAAGATTACTTCCATAGGCATGGCTAGTGCACTTGAAACACTGTGTGGGCAAGCTTATGGGGCAGGACAGTATCAAAAATTTGGAAATCATGTTTACACTGCTATATTGTGTCTGCTGTTTGTTTGCCTCCCTATAACTCTGTTATGGATCAACATTGGGAAGCTACTTGTTTTGATTGGGCAGGATCCTTTGATATCACGTGAAGTTGGGAAGTTCATGATTTGGCTTATTCCTGCGCTCTTCGCTTACGCATTTCTACATCCACTTATGAGATATTATCAGATGCAAGTTTTTGTTCTTCCCATGCTCATATTTAGTTGGATTACCTTTTGTTTGCACATACCTCTCTGTTGGGTTTTGGTGTATAAAACTGGACTCAAGAACCTTGGTGGAGCCTTGGCCATGAATATTTCATATTGGTTCAATGTGATTCTTCTTGCTTTATATATGAAATTTTCCCCCAAGTGTGAAAAAACTCGCGGTGTTGTTTCTATGGAGCTGTTTAAAGGAATTGGTGTCTTCCTTCACTTCGCTATCCCTTCTGCTGTCATGACTTGCCTTAGTTGGTGGTCATTTGAGCTGATTATCTTATTGGCTGGGTTTCTGCCTAATCCAGAGCTGGAGTCTTCAGTTCTATCTGTTTGCTTCAATACCATGACAACAATATTTACACTAGCTTATGGAATCGGCAGTTCTGGCAGTACTAGAGTTTCAAATGAATTAGGAGCTGGGAAGCCGCAAGCTGCTCGTGTAGCTGCTGGAGCATCGATATTTCTTGCAGTTGTGTCGATCATCATAGTGAGCATGGTTCTGTTCGCGCTTCGTCATGTTTTTGGTTATGCCTTCAGCAGCGATAGAGAAGTTGTGGATTATGTTGCTGTCATGGCTCCCTTAGTTTGTCTATCAATCATTTTTGATGCCATTCAAGGGGTCGTTTCTGGCATTATAAGAGGATGTGGTTGGCAGCGTGTTGGGGCTTATATAAACTTAGGGGCTTATTATCTCTGTGGAAATCCAGCTGCTTTGGCTCTTGGTTTCTTGGCAAATCTGAGAGGGGGGGGCCTGTGGATCGGCATCCAAAGCGGCGCTTTCGTGCAGATGCTTCTACTCGCGATCGTCATGAGGCGTGTAAATTGGGAAAAACAGGCAGATGAAGCAAGGGAGAGGATGTTTGAAGACAAAGGGCTTGGAAATAAATATGAGGCGCCAAATCCACACCCATTGGTGGTCTCGCTCAATTTTGATGCTTTTAAGGTTTACCTAACCATGTATGGATTTGTCAATTTGGCCATGGCCGATTTCCCATTGCTTGAATGGGTCGAGAATCGCCGGGAGACAACATGGGCTGCTTTCTTCGCGGAGGCGAAGACTGTTGGGTTCTTAGCGGTTCCATTGGTTGCCATTAATCTTTCTCAGTTCTTGATACAGACTGGTTCTTTGATGGTTGTGGGTCATCTCGATCAACTCGCTCTCTCCAGCACTGCCATAGCCGTTTCTTTAGCTGCTGTTTCAGGGTTCAGTGTGCTTATAGGCATGGCTAGTGCTCTTGAAACTCTATGTGGGCAAGCTTATGGGGCAGGACAATATCAAAAATTTGGGAATCATGTTTTCACTGCTATATTGTGTTTGCTAGTAGTTTGCCTCCCTATAACTCTGTTGTGGATCAACATTGGGAAGCTACTTGTTTTGGTTGGGCAGGATCCTTTGATATCACGTGAAGTTGGGAAGTTCATGATTTGGCTTATTCCTGGGCTCATTGCTTTTGCATTTCTGCACCCACTTATGAGATATTATCAGATGCAAGTTTTTGTGCTTCCCATGCTCATGTTTAGTTGGATCACCCTTTGTTTGCACATACCCCTCTGTTGGGTTTTGGTGTTTAAAACTGGACTCAAAAACCTTGGTGGAGCTTTAGCCATAAGTATTTCATATTGTTTGAATGTGATTCTTCTTGCTTTATATATGAAATTTTCCCCCAAGTGTGAAAAAACTCGCGGTGTTGTGTCTATGGAGCTGTTCAAAGGAATTGGACTCTTCCTTCACTTCGCTGTCCCTTCTGCAGTCATGACTTGCCTTAGTTGGTGGTCATTTGAGCTGATTATTTTATTGTCTGGGCTTCTACCAAATCCAGAGCTAGAGTCTTCAGTTCTATCTGTTTGCTTCAATACATTGACAACAGTATTTACAGTACCATATGGAATTGGCAGTGCAGGCAGTACCAGAGTTTCAAATGAACTAGGAGCTGGGAAGCCGCAAGCTGCTCGTGTAGCTGCCTGGGCTGCAATATTTCTTGCAGTTGTGGCAATCATCATAGTGAGCGTGGTCCTGTTTGCTCTTCGTCATGTTTTCGGTTATGCTTTCAGCAACGAAAAAGAAGTTGTGGATTATGTTGCTGTCATGGCTCCCCTAGTTTGTATATCAATCGTTTTGGATGCCATTCAAGGGGTCCTTTCTGGCATTATAAGAGGATGTGGCTGGCAGCGCGTTGGGGCTTATATAAACTTAGGGGCTTATTATCTCTGTGGAAATCCAGCTGCTTTAGCTCTTGGTTTCTTGGCAAATCTGAAAGGGAGGGGCCTGTGGATCGGCATCCAAAGCGGCGCTTTCGTGCAGATGCTTCTACTCGCGATCGTCATGGGCCGTGCAGATGAAGCTAGGGAAAGGATCTTTGAAGGAAAAGGAATCAACCAAGTGCACCCCATTCTCAGAGGGATTCGCTCGCCGACTGTGATGGGGAAACCGGATAAAGAGCGCCTCCTTCGAACTCTCAACTCGCATCTGAACACCATCCATGAAACTTTTCAGATGTTGGATCAAAATCCATCGTCTTCCCTTGAAAAGGTGAGCTGGGAGGATGTTCTGAAAATGAGCGACCAAGTCTACAAGCAGGCGACTGTCGCTGGAATGGTGTGGACTGGAGGAAGACTAGAAGTTACAGAAATTGAGGAAAACATGGCATCTTACTTCAATATGCTGCAGGGTTTCCTCCTGGTTTCCCATGGGAGTAAAGTGGGTGCTGGCCCTACTTTATCTTCTGTTATCCATGCATCTGTGAAGCAAGTAATTGATTCAAGTTCTAAGTTATGGAAGGAATCCATCTCTTTATATGGAAAAGTTTTGAAGAATAAGTTTATTGTTTGCTGTTCCTTTTTCTGCGTCGGGACCTCTTTGATATATGATCTAGATCTTGTTACTATCTATTACAGTATCATGGAGTTAAGTTTCCATCATAGAGCACTGATGATAGGGTTAAATTCATTTATTCGTTGTTGTGAATTCATGTTTGCAATTCTGTTCTTCTCTTTTGATAGAACTAGTGTTAACCTTGCTTGCTCTGCTCTTAAGAAAGCTCCTTCCACAAATGTAACTGCAATTGGCCGAGCCATAATGCAGGTTGCTGTATCAGTGAAGGACGTCCTCCGAGAAATGAAGGAGCTTAAACAAGGTCCCTCCGACTTGGACGACGCCCCCAGAGAATCATCTAACAAAGTTGAAAGCAGTTTGCACTCGCAGGATGAGGGTAATACAAGCGATGATGCCGATATAGGTAACGATTTATCAGCCGAAGAGATGAGAGTTGCTCAATCTGCTATTAGCATCATATCTTCAATACTTCAAGTTATTAAGGAACTCATTCGCTCTATCACTAGTTTGCTTAAGCTGGAAAATGAAACCAACGAAAGTAACTTAGCAACCGTGGAGAATCTATTGAGGCTATGCCAAGGAATTGGAGTGCAGGTGGACGAGCTTGGAGCTTGTCTTTACCCCCCACAAGAGGTCCCTGCCATTAAAGAAGCTTCTGAGAAAATTTCTAGCTTTCTTGACAATATGCAGGCAGAGTTGGGAAGTCTTAATGGTAATTCGGAAGGCTTTCTTCAGGCATGCAACAATCTCCGAAATTCATTGAAGCAGCTCGAGATCGAACTAGGTGGCTTCACAGATTCTGATCTAGAAAGTAGAATGCAGAATGTAACGTTAAACGACTAA 4266 43.74 MADSPLLEWVENRRETTWDAFFTEAKTVGLLAAPLAAINLSQFLIQTGSLMIVGHIDELALSSTAIAISLAAVTGFSVLICNLQTIAYSISMIKITSIGMASALETLCGQAYGAGQYQKFGNHVYTAILCLLFVCLPITLLWINIGKLLVLIGQDPLISREVGKFMIWLIPALFAYAFLHPLMRYYQMQVFVLPMLIFSWITFCLHIPLCWVLVYKTGLKNLGGALAMNISYWFNVILLALYMKFSPKCEKTRGVVSMELFKGIGVFLHFAIPSAVMTCLSWWSFELIILLAGFLPNPELESSVLSVCFNTMTTIFTLAYGIGSSGSTRVSNELGAGKPQAARVAAGASIFLAVVSIIIVSMVLFALRHVFGYAFSSDREVVDYVAVMAPLVCLSIIFDAIQGVVSGIIRGCGWQRVGAYINLGAYYLCGNPAALALGFLANLRGGGLWIGIQSGAFVQMLLLAIVMRRVNWEKQADEARERMFEDKGLGNKYEAPNPHPLVVSLNFDAFKVYLTMYGFVNLAMADFPLLEWVENRRETTWAAFFAEAKTVGFLAVPLVAINLSQFLIQTGSLMVVGHLDQLALSSTAIAVSLAAVSGFSVLIGMASALETLCGQAYGAGQYQKFGNHVFTAILCLLVVCLPITLLWINIGKLLVLVGQDPLISREVGKFMIWLIPGLIAFAFLHPLMRYYQMQVFVLPMLMFSWITLCLHIPLCWVLVFKTGLKNLGGALAISISYCLNVILLALYMKFSPKCEKTRGVVSMELFKGIGLFLHFAVPSAVMTCLSWWSFELIILLSGLLPNPELESSVLSVCFNTLTTVFTVPYGIGSAGSTRVSNELGAGKPQAARVAAWAAIFLAVVAIIIVSVVLFALRHVFGYAFSNEKEVVDYVAVMAPLVCISIVLDAIQGVLSGIIRGCGWQRVGAYINLGAYYLCGNPAALALGFLANLKGRGLWIGIQSGAFVQMLLLAIVMGRADEARERIFEGKGINQVHPILRGIRSPTVMGKPDKERLLRTLNSHLNTIHETFQMLDQNPSSSLEKVSWEDVLKMSDQVYKQATVAGMVWTGGRLEVTEIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQVIDSSSKLWKESISLYGKVLKNKFIVCCSFFCVGTSLIYDLDLVTIYYSIMELSFHHRALMIGLNSFIRCCEFMFAILFFSFDRTSVNLACSALKKAPSTNVTAIGRAIMQVAVSVKDVLREMKELKQGPSDLDDAPRESSNKVESSLHSQDEGNTSDDADIGNDLSAEEMRVAQSAISIISSILQVIKELIRSITSLLKLENETNESNLATVENLLRLCQGIGVQVDELGACLYPPQEVPAIKEASEKISSFLDNMQAELGSLNGNSEGFLQACNNLRNSLKQLEIELGGFTDSDLESRMQNVTLND 1421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7915110 7926204 + CmoCh04G015480.1 Cmo04g01548 380523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01548 1421 Pfam Grap2 and cyclin-D-interacting 1202 1371 - -
Cmo04g01548 1421 Pfam Grap2 and cyclin-D-interacting 1045 1129 - -
Cmo04g01548 1421 MobiDBLite consensus disorder prediction 1241 1276 - -
Cmo04g01548 1421 PANTHER MULTIDRUG RESISTANCE PROTEIN 547 972 - -
Cmo04g01548 1421 Coils Coil 1381 1401 - -
Cmo04g01548 1421 MobiDBLite consensus disorder prediction 1241 1269 - -
Cmo04g01548 1421 TIGRFAM matE: MATE efflux family protein 34 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo04g01548 1421 TIGRFAM matE: MATE efflux family protein 557 954 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo04g01548 1421 CDD MATE_eukaryotic 24 476 IPR045069 GO:0042910|GO:1990961
Cmo04g01548 1421 Pfam MatE 778 937 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo04g01548 1421 Pfam MatE 88 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo04g01548 1421 Pfam MatE 273 432 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo04g01548 1421 Pfam MatE 557 717 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo04g01548 1421 CDD MATE_eukaryotic 547 980 IPR045069 GO:0042910|GO:1990961
Cmo04g01548 1421 PANTHER PROTEIN DETOXIFICATION 14 547 972 - -
Cmo04g01548 1421 PANTHER PROTEIN DETOXIFICATION 14 24 479 - -
Cmo04g01548 1421 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 479 - -
Cmo04g01548 1421 Gene3D I/LWEQ domain 1210 1402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01548 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101208050 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01548 Cmo-Chr4:7915110 Cmo09g01281 Cmo-Chr9:11314017 1.17E-146 dispersed
Cmo10g00339 Cmo-Chr10:1527518 Cmo04g01548 Cmo-Chr4:7915110 1.36E-133 wgd
Cmo11g00301 Cmo-Chr11:1452068 Cmo04g01548 Cmo-Chr4:7915110 2.01E-136 wgd
Cmo18g00994 Cmo-Chr18:10851394 Cmo04g01548 Cmo-Chr4:7915110 1.09E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01548 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.175914 0.0 0.142509 0.212642