Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01550 ATGACCCTCTGCTTCTGCGTTAGAGCTTCAAAGACCATAGCCGCCACAGCTGCTAAATACCCTTTCTCTTTCAAGGTACGCCTTCTTCTCCCCTTCTCTTCATTGCTCCATTCCTGCACTCTAAACAACTCCATAGCAACCCTATCGGAATCCCATTATAGAGACCTTATCTTCGACACTATTGAAGAAAAGCCTTGGGCCTTTTGCAACAATAACTGGGTCTCCGATCAATTTAGTGCCGTGATCATTGACCCTGACTTGTTTATTCGAGTCCTCAATTCCATTCGAATCCGGCCTAGAGTTGCCTTGCGTTTCTTCCGATGGGTCGAGGCGCAGCGCGATTTTAAGGGATCGGAATTTGTGTTCTGTGCTATTCTTGATATTCTTGCTCAGAATAATTTGATGGGTTCTGCGTATTGGGTGATGGAGAGGGTGGTTAGCATTGAAATGCACGGAGTTGTTGATGTTTTAATTGCTGGGCATTTGTGTTTAGAGGCTTCAATTAAGCTTCTTGATATTCTATTGTTGATATGCACGAAGAAATCAATGGTTGATGAATGCTTGTTGATTTTTGATAAAATGATTCGGAATGGTTTGCTGCCTGATGTCAAGAACTGTAATAGGATTCTCAGGGTTTTAAGAGATGAGAATCTCGTGAGTAAAGCTAAAACTGTTTATAGGATGATGGAACAGTTTGGGATTAAGCCAACGATTGTCACGTTTAATACTATGTTGGATTCCTTTTGCAAGGAGGGGCAAGTACATCAAGCTTTAGAGCTTCTGTCAGAGATGCAAAAGAGAGGGTGTTTCCCAAATGATGTAACCTACAACGTGTTGGTCAACGGGTTGTCGAAGAAAGGAAAGCTCGAACAAGCAAAGGAACTTATTGAAGAGATGTTGAATTCTGGACTCAACGTTTCAGCATACACATATAATCCTCTGATCAATGGTTTTTGCAAGAAAGGACTGTTTGTTGAAGCATTCGATCTCGTGGAAGAAATGATGAATAGAAGAGCTTTCCCTACCTTATCGACTTATAATACTCTCATGTACGGCCTTTGTAAGTGGGGGCAAGTGACAGATGCTAGACTCCAGTTTTCTGATATGTTTAAAAGCAACTTTATGCCAGACATCGTTTCGTTCAACATCCTACTGTATGGTTACTGTAGGTCTGGGAGTATAAGTGAGGCCTTTCTCTTGTTTGATGAATTGAAATGCAGAGATCTCGTTCCGACCGTGGTAACATATAATACTCTTATATATGGGCTTTGCAGGTTGGGTTACTTGGATGTTGCTGTAAGGTTGAAAAAGGAAATGATTGATCAAGGGTTATTCCCTGACATCTTTACATATACTATACTGGTTAATGGGTCTTGCAAGTTAGGGAATTTATCAATGGCCAGAGAGTTCTTTGATGAGATGTTGTGCAAGGGGTTGAAGCCTGATCGTTTTGCTTACATCACTCGAATAGTAGGAGAAATGAAACTCGGTGATACATCTGTGGCATATAGCATGCGAGAAGAAATGTTGGCCGAGGGTATCCCTCCAGATGTTGTCACATACAACGTTTTCGTACATGGACTTTGTGAACAGGGAAACCTTCAAGAGGCGTGTGATCTATTAGAGAATATGGTTCACAATGGTCTTGTTCCAGACCATGTGACGTATACTAGTATCATTAACGCTTTCATGAAAAACGGTCACTTGAGGAAGGCAAGAGAGATTTTCAATGAAATGCTCAGCAAGGGTTTAGCCCCTTCTGTAGTAACATATACAGTTCTCATTCATGCACATGCAGCTAAGGGAATGATGGATCTAGCATTTATGTACTTCTCGAAAATGCTCGAGAAGGGCGTTCCAGCAAACGTAATCACATACAATGCAATAATTAATGGGTTTTGCAAGGTGAGGAGATTGGACGAGGCTTATAAATATTTCGATGAGATGGAAGAAAAAGGAATTCTTCCAAATAAGTTTAGTTATACCATATTAATTAATGAGAACTGCAACATGGATTATTGGGAAGAAGCTCTAAGATTGTACAGAGAAATGCTAGATCGAGAAATTCAGCCTGATTCTTTTACGCACGGCGTGCTTCTGAAGAATCTACATACAGATTTTAAAGTCCATGCAATACAGTGTGTAGAGAGTTTGATTCAAAATGTTGAAGATAATGTAAATGGCAGGTGA 2190 40.55 MTLCFCVRASKTIAATAAKYPFSFKVRLLLPFSSLLHSCTLNNSIATLSESHYRDLIFDTIEEKPWAFCNNNWVSDQFSAVIIDPDLFIRVLNSIRIRPRVALRFFRWVEAQRDFKGSEFVFCAILDILAQNNLMGSAYWVMERVVSIEMHGVVDVLIAGHLCLEASIKLLDILLLICTKKSMVDECLLIFDKMIRNGLLPDVKNCNRILRVLRDENLVSKAKTVYRMMEQFGIKPTIVTFNTMLDSFCKEGQVHQALELLSEMQKRGCFPNDVTYNVLVNGLSKKGKLEQAKELIEEMLNSGLNVSAYTYNPLINGFCKKGLFVEAFDLVEEMMNRRAFPTLSTYNTLMYGLCKWGQVTDARLQFSDMFKSNFMPDIVSFNILLYGYCRSGSISEAFLLFDELKCRDLVPTVVTYNTLIYGLCRLGYLDVAVRLKKEMIDQGLFPDIFTYTILVNGSCKLGNLSMAREFFDEMLCKGLKPDRFAYITRIVGEMKLGDTSVAYSMREEMLAEGIPPDVVTYNVFVHGLCEQGNLQEACDLLENMVHNGLVPDHVTYTSIINAFMKNGHLRKAREIFNEMLSKGLAPSVVTYTVLIHAHAAKGMMDLAFMYFSKMLEKGVPANVITYNAIINGFCKVRRLDEAYKYFDEMEEKGILPNKFSYTILINENCNMDYWEEALRLYREMLDREIQPDSFTHGVLLKNLHTDFKVHAIQCVESLIQNVEDNVNGR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7930064 7932253 + CmoCh04G015500.1 Cmo04g01550 380525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 370 508 IPR011990 GO:0005515
Cmo04g01550 729 Pfam PPR repeat 443 474 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat 513 545 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat family 236 285 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat family 376 425 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat family 551 598 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat family 309 355 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat family 622 670 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Cmo04g01550 729 Pfam PPR repeat 174 199 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cmo04g01550 729 SUPERFAMILY TPR-like 276 686 IPR011990 GO:0005515
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 659 693 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 414 448 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 274 306 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 379 413 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 177 203 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 624 657 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 589 622 IPR002885 -
Cmo04g01550 729 TIGRFAM PPR: pentatricopeptide repeat domain 449 482 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Cmo04g01550 729 PANTHER OS12G0152600 PROTEIN 94 721 - -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 651 721 IPR011990 GO:0005515
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 84 229 IPR011990 GO:0005515
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 509 581 IPR011990 GO:0005515
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 302 369 IPR011990 GO:0005515
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 230 301 IPR011990 GO:0005515
Cmo04g01550 729 Gene3D Tetratricopeptide repeat domain 582 650 IPR011990 GO:0005515
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cmo04g01550 729 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 94 721 - -
Cmo04g01550 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01550 - - - csv:101208294 1265.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01550 Cmo15g00977 CCT
Cmo04g01550 Cmo04g02188 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01550 Cmo-Chr4:7930064 Cmo19g00636 Cmo-Chr19:6899084 1.06E-23 dispersed
Cmo04g01550 Cmo-Chr4:7930064 Cmo04g00287 Cmo-Chr4:1444475 6.83E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012317 1 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 2 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01550 Cmo_Chr04 FPKM 0.0 0.0 7.737484 3.68034 0.0 1.340848 0.0 5.928623 4.440587 5.281397