Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01553 ATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCGTTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGGGAGGTTTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGGAGAATTTCTCTCTCAAAAGTCTCGGTTTAAATGTTTTCAAGATAACTCTGTCTCTAGATCAAGCAGCAGTGGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCTACAAGCATCTAGTAAGGCTGTGATGGAAAAAGTTCTTTGGCGGAGAAGTTTGCATCTGCGTGATCAACAGCATGCTTGGCAGTCATCTCTAGACGGAAGCGAAATGCTGGAATTCCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCATTATTGACCACAATATCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAATAGAATCACTCCGTGGTGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGCGAGAAGTTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACCGGCATCTTGTTGAGAAGACTGCTGGTTGATAGAAATTTGAAAGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGCGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTTACATTCCGGGATTCACACACCCTGTCAAAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCCAGAGAAGACTTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCTACTGTTCAGGATGCACTTATGGCAGCTGATTTTAACGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGATTTAATCTCATAGAATTTCTTCTAGTCAGTATATGTGAGAGTGAAATGCCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCACCCTTTATTAGGAGATCCAACTCGGGTCATGTTGTTGGCATGCCATGGCTCTATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACAAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACGATAAATGATGTTGTGTTTGTTCTGGATTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAACAACACTCCTTGTTTGCTTCCCTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGTCGTGTTCAACCTGGAGAATGTTATCATCTATACCCTAGGTCTGTGTTTGATTCTTTTTTCGAGTATCAGCTACCCGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCCTAAAGCTTGGAAGTATATCAGAGTTTCTATCTAGGGCTTTGCAGTCGCCAGAGCTACTAGCGGTTCAGAATGCTATTGAATATTTAAAGATCATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTCTTAGGTCGTTATTTGACTATGCTCCCAATGGAACCAAAATTGGGAAAGATGTTGATAATAGGTTCTATCTTCAATTGTTTGGATCCAATTTTGTCCATTGTTGCTGGCTTCAGTGTGAGAGACCCTTTTCTAACACCACTTGAGAAGAAGGACGCTGCAGAGGCTGCGAAGTCCCAATTTTCACGAGATCATAGTGATCACCTTGCCATTATCCGGGCTTATGAGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGTTACGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCGATGAAGGCTATTGATTCATTAAGGAAGGAGTTTTTCTCTTTGCTTAGAGATACTGGTTTAGTTGATGAGCACTCGAACACGTACAATGCTTGGAGTCTAGATGAACGACTCATACGTGCAGTTATTTGCTGTGGCCTCTATCCTGGAGTTTGCTCCATTGTGATGCAGCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGAACTCAGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAATGAGAAGATAAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCTATCTCTGACTCAATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCAAGAGGGACACTTGAAAATGTTGGGCGGTTTTTTGGAATTTTTTATGAAACCTGATGTAGCAGAGACATATCAGAAATTAAGAATGGAACTTGAAGAGCTTATACAGATGAAGCTACTAAATCCTACGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTATACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTTACTTTTGGCCGGCAGATCCTTCAGCAACCCTCCAAGAAATCAACTCTGGCCGCGGCACCAAATTCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTGCAGACTTTACTCACGAGGGCTGGATATGCTGCACCCATCTATAAGACAAAGCAATTGAAGAATAATCATTTCCAAGCAACCGTTGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTAAGGCTCTCGAGTGGTTAATGGGTGGAAATCAGATTGGGCACGACTATATCAACCAAATGTCTATGATGCTAAAAAGAAGCAAGAAGGATCATAACTAA 3066 41.81 MGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLGEFLSQKSRFKCFQDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKVLWRRSLHLRDQQHAWQSSLDGSEMLEFRKNLPAYKEKDALLTTISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEKTWKMSKQAPRKRKTQIASTVQDALMAADFNEYSLQTQESLSCWNPDCLGFNLIEFLLVSICESEMPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRSVFDSFFEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIIGSIFNCLDPILSIVAGFSVRDPFLTPLEKKDAAEAAKSQFSRDHSDHLAIIRAYEGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDEHSNTYNAWSLDERLIRAVICCGLYPGVCSIVMQHNEKSFSLKTMEDGQNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDQEGHLKMLGGFLEFFMKPDVAETYQKLRMELEELIQMKLLNPTMDLHSHHELLSAIRLLISEDQCEGRFTFGRQILQQPSKKSTLAAAPNSVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNHFQATVEFNGLQIMGQPCTNKKNAEKDAAAKALEWLMGGNQIGHDYINQMSMMLKRSKKDHN 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7943030 7953481 - CmoCh04G015530.1 Cmo04g01553 380528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01553 1021 SMART ha2_5 590 680 IPR007502 GO:0004386
Cmo04g01553 1021 Pfam Helicase associated domain (HA2) 591 668 IPR007502 GO:0004386
Cmo04g01553 1021 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 307 IPR014001 -
Cmo04g01553 1021 SMART DRBM_3 933 996 IPR014720 -
Cmo04g01553 1021 CDD DEXHc_RHA-like 146 306 - -
Cmo04g01553 1021 Gene3D - 395 547 IPR027417 -
Cmo04g01553 1021 Gene3D - 82 308 IPR027417 -
Cmo04g01553 1021 CDD SF2_C_RHA 311 536 - -
Cmo04g01553 1021 Pfam Helicase conserved C-terminal domain 397 527 IPR001650 -
Cmo04g01553 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 688 IPR027417 -
Cmo04g01553 1021 SMART helicmild6 422 528 IPR001650 -
Cmo04g01553 1021 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 932 997 IPR014720 -
Cmo04g01553 1021 Gene3D - 910 999 - -
Cmo04g01553 1021 Pfam DEAD/DEAH box helicase 140 290 IPR011545 GO:0003676|GO:0005524
Cmo04g01553 1021 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 568 IPR001650 -
Cmo04g01553 1021 MobiDBLite consensus disorder prediction 911 935 - -
Cmo04g01553 1021 SMART ultradead3 128 316 IPR014001 -
Cmo04g01553 1021 Pfam Double-stranded RNA binding motif 933 995 IPR014720 -
Cmo04g01553 1021 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 1 945 - -
Cmo04g01553 1021 PANTHER ATP-DEPENDENT RNA HELICASE 1 945 - -
Cmo04g01553 1021 Gene3D - 570 680 - -
Cmo04g01553 1021 SUPERFAMILY dsRNA-binding domain-like 928 1010 - -
Cmo04g01553 1021 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 746 825 IPR011709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01553 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 1858.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01553 Cmo18g00996 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01553 Cmo-Chr4:7943030 Cmo14g00362 Cmo-Chr14:1652257 0 dispersed
Cmo01g00327 Cmo-Chr1:1545150 Cmo04g01553 Cmo-Chr4:7943030 2.00E-48 transposed
Cmo10g00338 Cmo-Chr10:1517532 Cmo04g01553 Cmo-Chr4:7943030 0 wgd
Cmo18g00996 Cmo-Chr18:10877440 Cmo04g01553 Cmo-Chr4:7943030 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01553 Cmo_Chr04 FPKM 4.847987 5.690486 14.140937 14.609358 6.516667 6.926544 6.989461 3.494409 3.257898 3.267267