Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01562 ATGGCTAAGTTCCCTTCCATTCCCCTGTTTTTTCTCCTCTGCAACATCTGTCTTTCCATGGCGTCTTTGAACGATGACCGCATTGCTCTTTTGTCTTTCAAACAGTCCATTTCTGAAGACCCATACGCCTCTCTCAGCAACTGGAATTCTTCTGATGAAACCCCATGTGGTTGGAATGGTGTTACATGCAAGGATCTAAGAGTTGTTTCTCTCAGCATTCCCAACAAGAAACTCAACGGTGTTCTTCCTTCTTCTCTGGGGTTTCTCTCCGAGCTTCGTCATGTGAATCTGAGGAGTAATAACCTCCATGGAGCCTTGCCATTACAGCTTTTCGAAGCTAATGGAATCCAAAGTTTGGTGCTTTATGGTAATTCCTTATCTGGGTCTGTGCCAAATGAGATTGGTAACCTCAAAAACCTTCAAATCTTGGATTTATCTCACAATTTCTTTAATGGGTCGTTGCCTGTTTCCTTGATGCAATGCAGAAGATTGAGAATTCTTGATCTTACTCATAACAACCTTACCAATTCCCTGCCTAATGGGTTTGGTTCCAGTTTGAATTTCTTGGAAAATTTGGATCTTTCTTACAATAACTTCAATGGTTCAATTCCAGTGGATATTGGTAATCTGTCTAGCTTGCAAGGCACTGTTGATTTCTCTCATAATCTCTTCTCCGGCTCTATCCCACCCACCCTGGGAAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAATAATCTGAGTGGTTCAATCCCCCAAAATGGTGCTCTTATGAACAGAGGACCAACAGCTTTCATTGGGAATCCTGGCCTTTGTGGACCGCCATTGAAGAATCCATGTTCTTCTGAAGCCCCGGCTGCAAGTTTATCTTCACCAGACAATGGTAATAAGTATGGGAAAGGAGGGGTGAGTAAGAGCAGTTTGGTTGCAATAATCATAGGTGATATCATTGGTATTTGCCTGATTGGTGTTATGTTATCTTATTGCTATTTGAGGTTTTGGATTCATAGAAATGGGAAGAAGGCAGACCAATCTAAGTATGGTTTAGAGAAGGATGAGAAAGGAAGAAAGCATTGTCTGTGCTTTCAAAAGGGTGAATCCGAGAACGTTTCGGAGCATATCGAGCAGTTTGATTTGGTACCTCTGGATTCACGAGTCACGTTTGATCTCGACGAACTTCTCAAGGCATCGGCTTTCGTTTTGGGAAAAAGCGGTATCGGTATAGTGTATAAAGTTGTTCTTGACGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTCAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCAAATCTTGTTAGTCTCAGAGCATATTATTGGTCTGTTGATGAAAAACTGCTTATTTATGATTACATACCAAATGGGAACCTTGCATCTGCCATTCATGGGAAGCCCGGAACGACACCGTTTACACCGCTACCGTGGTCTACTCGGTTAAGGATCATGGAAGGCATTGCGAAAGGGTTGGTTTACTTGCACGAGTTCAGCCCCAAAAAGTATGTTCATGGTAATTTGAGAACCAACAACATACTTCTTGGACACGACATGATACCACATATTTCGAATTTCGGGCTTGCCCGCCTTGTTAACATTGCTGGAGGTACTCCGACCGTGCAATCGAGTCATATGGCAGAAGAAAAACAACTAAAGTTTGCCACTTCTGAAGCTAGTACATTCAGTTCTAGTATGATTACTTACTACCAAGCTCCCGAATCGTTCAAAGTCGTGAAGCCATCGCAGAAATGGGACGTGTACTCGTATGGTGTGATATTACTCGAAATGATCACAGGAAGGTTGCCTATAGTTCAGGTGGGAGCCTCGGAAATGGATCTTGTTCAATGGATTCAACTCTGTATTGAGGAAAAGAAGCCGCTTTCGGACGTGATAGACCCGAGTTTGGCTCCCGACGATGATGCGGATGAGGAGATCATCGAGGTTTTGAAGATGGCATTAGGTTGTGTTCAAAATAGTCCAGAAAGAAGACCGGCAATGAGACATGTTTGTGATGGTTTGAGCAGGTTGGGTGTCACTCCAAACTGA 2100 42.81 MAKFPSIPLFFLLCNICLSMASLNDDRIALLSFKQSISEDPYASLSNWNSSDETPCGWNGVTCKDLRVVSLSIPNKKLNGVLPSSLGFLSELRHVNLRSNNLHGALPLQLFEANGIQSLVLYGNSLSGSVPNEIGNLKNLQILDLSHNFFNGSLPVSLMQCRRLRILDLTHNNLTNSLPNGFGSSLNFLENLDLSYNNFNGSIPVDIGNLSSLQGTVDFSHNLFSGSIPPTLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSEAPAASLSSPDNGNKYGKGGVSKSSLVAIIIGDIIGICLIGVMLSYCYLRFWIHRNGKKADQSKYGLEKDEKGRKHCLCFQKGESENVSEHIEQFDLVPLDSRVTFDLDELLKASAFVLGKSGIGIVYKVVLDDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNLVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGTTPFTPLPWSTRLRIMEGIAKGLVYLHEFSPKKYVHGNLRTNNILLGHDMIPHISNFGLARLVNIAGGTPTVQSSHMAEEKQLKFATSEASTFSSSMITYYQAPESFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIEVLKMALGCVQNSPERRPAMRHVCDGLSRLGVTPN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7987916 7990370 - CmoCh04G015620.1 Cmo04g01562 380537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01562 699 SUPERFAMILY Protein kinase-like (PK-like) 401 689 IPR011009 -
Cmo04g01562 699 Pfam Protein tyrosine and serine/threonine kinase 402 689 IPR001245 GO:0004672|GO:0006468
Cmo04g01562 699 Gene3D Transferase(Phosphotransferase) domain 1 472 697 - -
Cmo04g01562 699 Gene3D Phosphorylase Kinase; domain 1 365 471 - -
Cmo04g01562 699 ProSiteProfiles Protein kinase domain profile. 396 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01562 699 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 695 - -
Cmo04g01562 699 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Cmo04g01562 699 CDD STKc_IRAK 402 694 - -
Cmo04g01562 699 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Cmo04g01562 699 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Cmo04g01562 699 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 9 695 - -
Cmo04g01562 699 SMART LRR_typ_2 162 184 IPR003591 -
Cmo04g01562 699 SMART LRR_typ_2 186 210 IPR003591 -
Cmo04g01562 699 SMART LRR_typ_2 137 161 IPR003591 -
Cmo04g01562 699 SMART LRR_typ_2 89 113 IPR003591 -
Cmo04g01562 699 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cmo04g01562 699 SUPERFAMILY L domain-like 23 278 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01562 Cmo04g02173 CCT
Cmo04g01562 Cmo18g01006 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01562 Cmo-Chr4:7987916 Cmo04g01922 Cmo-Chr4:9813402 0 dispersed
Cmo18g01006 Cmo-Chr18:10958254 Cmo04g01562 Cmo-Chr4:7987916 0 wgd
Cmo04g01562 Cmo-Chr4:7987916 Cmo04g02173 Cmo-Chr4:15831220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74277 PF07714 PK_Tyr_Ser-Thr 2.90E-27 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01562 - - csv:101215811 1192.56