Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01566 ATGGCTTCCAGAGAAGGGCAGCGGCGGCGTCAACATAATCACAATCTGGTGCCTCTTGCTGCTTTGATCAGTCAAGAGGCGAGGAGCGAGAGGTTGGAGAAACCGAGTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAGGGGGAAGATTATTTTCTCATGAAAACTGATTGTCAGCGACTTCCTGGGAATCCTTCATCCACTTTCTCTGTTTTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCGTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGTAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATCGATGGATGGACGGTGACAGTAGCGTCGGTTGGAGATTCCCGGTGTATTTTAGATGCTCAGGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTCGAAGAGAGAGAACGTGTGACTGCAAGTGGTGGGGAAATTGGAAGATTAAGCATTGTTGGTGGTGCTGAGATCGGCCCGCTCCGTTGTTGGCCGGGAGGCTTATGCCTTTCTCGATCCATTGGAGACATGGATGTCGGGGAGTTCATAGTTCCAATTCCGTTCGTGAAACAAGTAAAGTTATCAAACGCTGGTGGGAGGCTAATAATTGCTTCTGATGGCATCTGGGATGCCCTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCAGCAGAGCTAGCTGCTAGGCAAGTTGTGAAGGAAGCCTTGAGAACAAGAGGCTTGAAAGATGATACAACGTGTATAGTTGTAGACATAGTTCCTCCAGATAATTCATTACAGTCTTCCTCTCCCCAGAAGAAACAAAGCGTACTCAAATCTCTGTTATTCAGGAAAAAGTCTCACAGTTCTAACAAGCTATCCAAGAGCCTGTCAGCAGTCGGTTTCGTCGAAGAATTATTCGAAGACGGCTCCGCCATGCTTGCTGAAAGGCTGGGAACTGTAGAGTTGAGTGGATCTAAACACGGCACACCCGGACTGTTCTCTTGTGCTGTATGTCAAATAGATCTTGCTCCCAGTGAAGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGCGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAGCGTCCCAGCGGTGTGAGAGTGGCATAG 1299 48.73 MASREGQRRRQHNHNLVPLAALISQEARSERLEKPSVRYGNAAQSRKGEDYFLMKTDCQRLPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDAQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIVPPDNSLQSSSPQKKQSVLKSLLFRKKSHSSNKLSKSLSAVGFVEELFEDGSAMLAERLGTVELSGSKHGTPGLFSCAVCQIDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8006180 8009655 + CmoCh04G015660.1 Cmo04g01566 380541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01566 432 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 7 432 - -
Cmo04g01566 432 SMART PP2C_4 28 298 IPR001932 -
Cmo04g01566 432 CDD PP2Cc 47 300 IPR001932 -
Cmo04g01566 432 SUPERFAMILY PP2C-like 45 300 IPR036457 -
Cmo04g01566 432 Pfam Protein phosphatase 2C 64 285 IPR001932 -
Cmo04g01566 432 Gene3D - 39 307 IPR036457 -
Cmo04g01566 432 PANTHER ALPHABET, ISOFORM E-RELATED 7 432 - -
Cmo04g01566 432 SMART PP2C_SIG_2 54 300 IPR001932 -
Cmo04g01566 432 ProSiteProfiles PPM-type phosphatase domain profile. 31 300 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01566 Cmo18g01015 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01910 Cmo-Chr1:13709304 Cmo04g01566 Cmo-Chr4:8006180 1.38E-169 dispersed
Cmo04g01566 Cmo-Chr4:8006180 Cmo09g00211 Cmo-Chr9:983713 0 dispersed
Cmo10g01229 Cmo-Chr10:12283438 Cmo04g01566 Cmo-Chr4:8006180 0 transposed
Cmo11g01302 Cmo-Chr11:8904360 Cmo04g01566 Cmo-Chr4:8006180 0 transposed
Cmo18g01015 Cmo-Chr18:10985698 Cmo04g01566 Cmo-Chr4:8006180 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01566 - - csv:101216777 779.63