Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01567 ATGGCGGCGTCCACTCGGCTGTCGCATTTGGCTCTCTATATTTGCTTACTCCACTTTACATGTCTTTATGCGTCTTCGAATGTAGATTTAGACGCTCTAATGGCGTTCAAAGCGGCGTCTGATAAAGGGAATAAGCTCACCACATGGAACTCTACCTCTAATCCATGTGCTTGGGATGGAGTTTCTTGCCTCAGAAATAGGGTCTCGAGGTTGGTTCTTGAGAATCTTGATCTTACAGGCTCTATGGCTCCTCTTACTGCTTTGACTCAGTTACGAGTGCTGAGCCTTAAGCGGAACCGTCTCTCTGGTCCCATTCCCGACCTCTCCAACTTCACTGCTCTCAAACTCGTGTTTCTATCGTACAATGAATTTTCCGGTGACTTCCCGGCTTCTTTTCGGTCTCTCGTCCGGCTCTACCGCCTCGATCTTTCTCACAATAACCTAACTGGAGAGATACCGGCTTCTGTTAACCGTATGACTCATCTTCTCACTCTCCGCCTCGAAGATAACCGGTTTTCAGGTTCTATTTTGGAACTGAACCTGCCGAATCTTCAGGACTTCAATATTTCAGCGAACGGTCTCTCTGGCGAAATCCCCAAATCGTTGTCGACGTTTCCTGAGTCTTCTTTCGCCCAGAACTTGGGTTTGTGTGGTTCCCCTCTTCAGAGCTGTAAGAGCATTGTCAGTAATCCAACGGAACCTGGATCCGAAGGGGCAATTGCCTCGCCCATTACACGGCCGCGGAACCTCACTGTTTCATCTTCTCCGACTTCCCTTCCCGGAGTTTCACCTGAAACAAAGCCGGAAAATACACACCATCACAGCACTGGAAAGATAGGTTCTCTAGCACTAATCGCCATAATTCTCGGCGACGTTTTGGTGCTAGCAGTGGTCTCGCTTCTTCTCTACTGTTATTTCTGGAAAAACTCTGCTGACAAATCCCGAGACAGGAAGGGATCGTCGAAGCTTCTGGAGAGCGAGAAGATTGTTTACTCTTCTAGTCCATTTCCAGTCCAAGCCGGAACAGAGAGAGGCCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGTAAGGGTGGGTTCGGAACTTCGTACAAGGCGATTCTCGACGACGGCAATGTGGTGGCGGTGAAACGGCTGAAAGATGCTCAGGTTGGAGGAAAACGAGAGTTCGAGCAGCACATGGAGGTATTGGGAAGGTTGAGACATGCTAATATTGTAAGCTTGAGAGCGTACTATTTTGCAAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTCTTCTGGCTTCTTCACGGGAACAGGGGTCCTGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATTGCCGCCGGAGCGGCTAGAGGACTCTCCTTCATTCACAACTCCTGCAAGTCCCTCAGGCTCGCCCATGGCAATGTTAAATCCACCAACATCCTTTTAGACCAATCTGGAAATGCTCGCGTCTCTGATTTCGGATTGGCCCTTTTCACTCCCCCTTCCACTCCTCGATCCAACGGTTACCGGGCTCCGGAGTGCGGTGAGGGTAGAAAACTGACACAGAAGGCGGATGTGTACTCGTTTGGGGTTCTTCTCCTCGAGCTGCTTACTGGAAAGTGCCCTTCCGTTATGGAGAATGGCGGTGGATACGGCGGCGTGTTGGATTTGCCCCGGTGGGTTCAGTCGGTGGTGCGAGAGGAGTGGACGGCTGAAGTGTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATCGCCTTGGCCTGTACATCGGCTTCGCCGGATCAACGGCCGAAGATGAGCCATGTGGTGAAGATGATTGAGGAGCTCCGAGGGATGGAGGTGTCGCCGTTCCATGACGGAACTGACTCAGTTACAGAGTCGCCGTCAGTTTCGGAGGGGACTTGCGGCGGAGGAGCCAGCCAGTAA 2007 51.27 MAASTRLSHLALYICLLHFTCLYASSNVDLDALMAFKAASDKGNKLTTWNSTSNPCAWDGVSCLRNRVSRLVLENLDLTGSMAPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNEFSGDFPASFRSLVRLYRLDLSHNNLTGEIPASVNRMTHLLTLRLEDNRFSGSILELNLPNLQDFNISANGLSGEIPKSLSTFPESSFAQNLGLCGSPLQSCKSIVSNPTEPGSEGAIASPITRPRNLTVSSSPTSLPGVSPETKPENTHHHSTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWKNSADKSRDRKGSSKLLESEKIVYSSSPFPVQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSFFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLSFIHNSCKSLRLAHGNVKSTNILLDQSGNARVSDFGLALFTPPSTPRSNGYRAPECGEGRKLTQKADVYSFGVLLLELLTGKCPSVMENGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIEELRGMEVSPFHDGTDSVTESPSVSEGTCGGGASQ 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8011158 8013889 + CmoCh04G015670.1 Cmo04g01567 380542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01567 668 Pfam Protein kinase domain 366 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01567 668 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cmo04g01567 668 Gene3D Transferase(Phosphotransferase) domain 1 439 650 - -
Cmo04g01567 668 MobiDBLite consensus disorder prediction 642 668 - -
Cmo04g01567 668 MobiDBLite consensus disorder prediction 232 275 - -
Cmo04g01567 668 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Cmo04g01567 668 PANTHER - 24 651 - -
Cmo04g01567 668 SUPERFAMILY L domain-like 44 205 - -
Cmo04g01567 668 MobiDBLite consensus disorder prediction 647 668 - -
Cmo04g01567 668 MobiDBLite consensus disorder prediction 246 265 - -
Cmo04g01567 668 ProSiteProfiles Protein kinase domain profile. 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01567 668 Gene3D Ribonuclease Inhibitor 179 225 IPR032675 -
Cmo04g01567 668 CDD STKc_IRAK 369 636 - -
Cmo04g01567 668 SUPERFAMILY Protein kinase-like (PK-like) 367 633 IPR011009 -
Cmo04g01567 668 Pfam Leucine rich repeat 90 148 IPR001611 GO:0005515
Cmo04g01567 668 Gene3D Phosphorylase Kinase; domain 1 338 438 - -
Cmo04g01567 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 651 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00415 Cmo-Chr4:2050413 Cmo04g01567 Cmo-Chr4:8011158 1.43E-109 dispersed
Cmo04g01567 Cmo-Chr4:8011158 Cmo06g00432 Cmo-Chr6:2078694 4.89E-177 dispersed
Cmo14g01203 Cmo-Chr14:10250707 Cmo04g01567 Cmo-Chr4:8011158 1.89E-108 dispersed
Cmo16g00279 Cmo-Chr16:1252897 Cmo04g01567 Cmo-Chr4:8011158 2.72E-109 dispersed
Cmo18g01016 Cmo-Chr18:10990716 Cmo04g01567 Cmo-Chr4:8011158 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74278 PF00069 Pkinase 2.10E-34 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01567 - - csv:101217010 1201.81