Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01568 ATGTTGGTTACGCTTACGGCCATTCATAACAGCCACGCTGGTGGAGCCGTCGCCGCTATGGCTGATGCTTCTCCGGTGAATTCCTCAATGGAATCATGTTCCAGAATTGTCGCTGCGGAATCTCCGATTCTCATATTTGTCTTCTTTCACAAGGCTATACGTGCTGAGCTTGATCGCTTCCATCGCGACGCTATTGAATTCGCTACCAACCAGCAAAGTGGTGGCGATATTGGACCGTTGTTGCAGCGCTATCACTTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCCGAGGACGAGGTCATCTTCCCGGCTTTAGATTTGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAGAGTGTTCTGTTTTGCCAATTGCTGGAGCTTCTGAATTCTAATGCGTTGGAGGAAGGGAGCTATAAGAGGGAGCTGTCATCTTGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAAGAACAGGTGTTCCCGTTACTTACAGAGAAGTTTTCTTTTGAAGAACAGGCATCATTAGTATGGAAATTTCTTTGTAGTATACCTATTCATATGCTGGAAGTCTTTCTTCCGTGGCTCTCTTCCTCTATTTCTCCGGATGAGCTTCAGATTATGTGCAAATGCTTGAGCAAAATTATCCCAGAGCAAAAGCTTCTTCAGAAGATAATATTTTCCTGGATGGAGGATGCAAGAACGACTCGTGCCAATCAAAGTTTGTATGACGAAAATTTAGACTTTCAATGTCTAGGTTCTCAGATTCATGATCTTATATGTAGACCAGAGAAGGGGAATGACACTTCTGAATCAGCTAGAATTGGTAAAAGGAAATACATGGAGCAAAGCAATTTTACCTATTCTACTGTTTCAATTGCTTGCCCCATCAATGAAATATTATATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATTGCTGAGGCAGCTAGGGACCTACCATTGTCTTCTGATTTTTCTGAGTTGTCTGCACTAAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTTCCTGCTGTAGATGCTGAATTATCTTTTGCTGATAAGCATGCAGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAGAGTATCCAAGCTGATAGAGCTAAATATTCTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAGAAGCACTTCCATGATGAGGAGTTGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGACCTCAGAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCCTTTCTTCAGAATATGCAAATGGCAGCTCCAAAGTCGGATCATGCACTTGTTACACTATTTTCTGGTTGGGCATGCAAAGGTCATCCCAGGAGCCTTTGTTTTTCTGCAAGTGATCTTAGCCATTGTGCTGAACGGATATCGACTGGAAATGAAGAATCATGCTCCTCCTTTTCTTCTGCCAATGAAAAACCTTCTTGCATTCAGGCAACTGAGTGTGCCAGGCCATCCAAATGTGAGAAGGAAGTATGCCATGGAGACTTAAATGGCCGTCTTCCTTTGAAAAGCTCAAGCAAAAAACGTCAGTTCACTCGCTCGAAAAAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTCTGGCAGCAGCAAAATCATTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTCTGGAGAATGATCCAATCTCCTGTGGCAGTGGTTCTAAGTCACGACCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTTTTTGGATAATGAATCTGTGAATCTCGGTGACTGCAATGATACATTCTTTAGGAAATTTTGCGGTAGGTTTCATCTGTTGTGGGGTTTATATAAAGCTCATAGTAATGCAGAGGACGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGTCACTCTTATACATTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTTTCTAAGCTTACAAACGTTCGCAGAGACTTGAATGGTAAGAAAAACTGTAACGATTCAAATTGGATCATGTCTCATACCTCTGATATTGATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGTAGATCAATCAGAGTGACACTTGACCAACATATTTTCCGTGAGGAATCGGAGTTGTTACCGTTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAGAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGCCCTGCTACATCTCCACATTATATGGAATCTGTCAGTCATGTATCTGGAGGTTCTGATTCCCATGGCAACTGTGACCATAAAAATGATTCGGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAATGAAAATGAACTTGAATCAGAAATAAGAAACGTTGCCCGGGATTCAACCATTGACCCTAGGAGAAAAGATTATCTGATTCAGAACTTGATCACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCCACTGCAGGTGAAAACTCAGATGCAAAAGAACTGATTGCATGTGCCCCATCATTTCGTGATCCCGAGAAACAGATTTTCGGGTGTGAGCATTATAAAAGAAACTGTAAGCTTCTTGCAACTTGTTGTGGCAAGTTGTTCACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCGATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTACTGCATCTGTTTGCTCAACACCAGCCTGTGGTGGTCTCTCTATGGCAAAGTTCTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGTCCCTTCTGCAATTTATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCATTGTATGACATGCAACTGTTGTTTGGCAATGAAGTTAGTTGATCACAAGTGCCATGAGAGGGGCCTAGAAACAAACTGCCCTATTTGCTGTGATTTTTTGTTCACGTCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTCGGCATGCTTGACGCATTACTGGCATTGGAGGTACTCCCTGAAGAATACATGGAACGCTGTCAGGACATATTGTGCAATGACTGCTCCAACAAGGGGAAAGCGCGCTTCCACTGGCTGTACCATAAATGTGGGAATTGTGGATCTTACAATACCAAGGTGATTAAGTGTGGCCTTATGGCATGGCATGACAACAGTAGAAGGACAGCATTTTGTATGGTTTTCATAATGGAAAATGGAAAGACAAGTAGAGATCCAGTTAGGCTTTGGAATCGTGGGAATTTCGTCTCGAACAAAAGAGGTGGAATTCCTTGCGGTTGTGGGTTTGGGTGTGGATATCATATGATTTTGGAAGTGGGTTGA 3879 41.69 MLVTLTAIHNSHAGGAVAAMADASPVNSSMESCSRIVAAESPILIFVFFHKAIRAELDRFHRDAIEFATNQQSGGDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPIHMLEVFLPWLSSSISPDELQIMCKCLSKIIPEQKLLQKIIFSWMEDARTTRANQSLYDENLDFQCLGSQIHDLICRPEKGNDTSESARIGKRKYMEQSNFTYSTVSIACPINEILYWHNAIKKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADKHAEEEIQFDKLRHLIESIQADRAKYSSAEIHKKLSSHADQIIKTIQKHFHDEELHVLPLARKHFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPKSDHALVTLFSGWACKGHPRSLCFSASDLSHCAERISTGNEESCSSFSSANEKPSCIQATECARPSKCEKEVCHGDLNGRLPLKSSSKKRQFTRSKKSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPSLNSSLFSLENDPISCGSGSKSRPIDNIFKFHKAISKDLEFLDNESVNLGDCNDTFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNVRRDLNGKKNCNDSNWIMSHTSDIDDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMESVSHVSGGSDSHGNCDHKNDSVFKPGWKEIFRMNENELESEIRNVARDSTIDPRRKDYLIQNLITSRWIASQQMLPQATAGENSDAKELIACAPSFRDPEKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPTASVCSTPACGGLSMAKFYCSICKLFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCHERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYMERCQDILCNDCSNKGKARFHWLYHKCGNCGSYNTKVIKCGLMAWHDNSRRTAFCMVFIMENGKTSRDPVRLWNRGNFVSNKRGGIPCGCGFGCGYHMILEVG 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8015730 8025815 + CmoCh04G015680.1 Cmo04g01568 380543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01568 1292 CDD RING-H2_Pirh2 1120 1163 - -
Cmo04g01568 1292 CDD Hr-like 310 437 - -
Cmo04g01568 1292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1165 IPR013083 -
Cmo04g01568 1292 Gene3D nmb1532 protein domain like 40 193 - -
Cmo04g01568 1292 Gene3D nmb1532 protein domain like 310 454 - -
Cmo04g01568 1292 Pfam Hemerythrin HHE cation binding domain 648 809 IPR012312 -
Cmo04g01568 1292 Pfam Hemerythrin HHE cation binding domain 48 175 IPR012312 -
Cmo04g01568 1292 Pfam Hemerythrin HHE cation binding domain 310 439 IPR012312 -
Cmo04g01568 1292 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Cmo04g01568 1292 CDD Hr-like 45 173 - -
Cmo04g01568 1292 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 1229 - -
Cmo04g01568 1292 CDD Hr-like 652 808 - -
Cmo04g01568 1292 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Cmo04g01568 1292 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 32 1229 - -
Cmo04g01568 1292 SUPERFAMILY CHY zinc finger-like 984 1048 IPR037274 GO:0008270
Cmo04g01568 1292 Pfam Ring finger domain 1120 1162 IPR001841 -
Cmo04g01568 1292 SMART ring_2 1121 1162 IPR001841 -
Cmo04g01568 1292 Gene3D - 1192 1232 - -
Cmo04g01568 1292 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Cmo04g01568 1292 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Cmo04g01568 1292 SUPERFAMILY RING/U-box 1120 1167 - -
Cmo04g01568 1292 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Cmo04g01568 1292 Pfam Zinc-ribbon 1168 1224 IPR039512 -
Cmo04g01568 1292 Gene3D nmb1532 protein domain like 643 869 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01568 Cmo-Chr4:8015730 Cmo10g00185 Cmo-Chr10:838715 8.32E-17 dispersed
Cmo10g00184 Cmo-Chr10:837219 Cmo04g01568 Cmo-Chr4:8015730 3.72E-09 transposed
Cmo10g00326 Cmo-Chr10:1467626 Cmo04g01568 Cmo-Chr4:8015730 0 wgd
Cmo11g00287 Cmo-Chr11:1390582 Cmo04g01568 Cmo-Chr4:8015730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01568 K16276 - csv:101217252 2146.32