Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01569 ATGGGGACGAGTTCAAAGACGGAAGGACCTTCAACCCCGGCTCTTCGACGAGACCCATATGATGTATTGTCTGTGTCCAGAGATTCTACAGATCAGGAGATTAAGACTGCTTATAGGAAACTCGCGCTCAAGTATCATCCTGATAAAAATGTAGGGAATCCTGAGGCTTCAGAATTGTTCAAGGAGGTTGCTTATTCTTACAACATTTTATCTGATCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCTCTTGATGTGGATGGTATGGACATGGAAATTGACTTATCCAATTTGGGGACTGTCAATACCATGTTTGCAGCTCTGTTCAGTAAGTTGGGTGTCCCCATTAAGACTACAATCTCAGCGAACGTTCTTGAAGAAGCTCTAAATGGAACGGTGACCATCAAACCTCTTCCTCTCGGAACATCAGTCAGCGGGAAGGTAGAAAAACAGTGTGCTCACTTCTTTGGTGTAACAATCAATGATCAGCAGGCTGCAGCAGGCATTGTTGTCAGAGTTACTTCCACTGCACAAAGCAAATTTAAGCTGCTATATTTTGAGCAAGATGCCAATGGTGGTTATGGTTTAGCCTTACAGGAGGATAGTGAGAAAACTGGCAAGGTTACATCTGTGGGGATGTATTTTCTACATTTTCAAGTATACAGAATGGATTCAACTATGAATGCGGTGGCAATGACCAAGGACCCGGAGGCTGCGTTTTTCAAGAGATTGGAAGGCCTTCAGCCTTGTGAGGTTTCAGAACTAAAAGCTGGAACTCATATATTCGCTGTCTATGGTGATAACTTCTTCAAGCCTGCAACATACACAATCGAGGCGATTTGCGCAAAATCATATGAAGAGACAACAGAGAAGCTTAAAGAAATCGAAGCTCAAATTTTAAGAAAGAGAAATGATTTGCGCCAATTCGAAAGTGAATATAGGAAGGCACTTGCACGCTTTCAAGAAGTCACAAATCGATACAGCCAGGAAAAACAATTTGTCGATGAGCTTCTAAAAATGAGAGATAATATCCACTCATCTTTCACCGTTTCCAGGCCAGCAAACCATAACGATAATGTCAGTGGCTTAAGTAATGGAAAAGTTGATGATTCAAAAGTTTGCACTCCTGGAGAAGATGGTGGCTCAGATGGAAAGGACAGACCTACCAAGAAGAAGTGGTTCAATCTTAACCTCAAAGGGTCAGACAAAAAGCTTGGTTGA 1230 42.36 MGTSSKTEGPSTPALRRDPYDVLSVSRDSTDQEIKTAYRKLALKYHPDKNVGNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDVDGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTIKPLPLGTSVSGKVEKQCAHFFGVTINDQQAAAGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSVGMYFLHFQVYRMDSTMNAVAMTKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKPATYTIEAICAKSYEETTEKLKEIEAQILRKRNDLRQFESEYRKALARFQEVTNRYSQEKQFVDELLKMRDNIHSSFTVSRPANHNDNVSGLSNGKVDDSKVCTPGEDGGSDGKDRPTKKKWFNLNLKGSDKKLG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8025863 8029409 + CmoCh04G015690.1 Cmo04g01569 380544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01569 409 CDD DnaJ 18 72 IPR001623 -
Cmo04g01569 409 MobiDBLite consensus disorder prediction 352 396 - -
Cmo04g01569 409 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Cmo04g01569 409 Gene3D DnaJ domain 4 96 IPR036869 -
Cmo04g01569 409 PRINTS DnaJ domain signature 20 38 IPR001623 -
Cmo04g01569 409 PRINTS DnaJ domain signature 38 53 IPR001623 -
Cmo04g01569 409 PRINTS DnaJ domain signature 55 75 IPR001623 -
Cmo04g01569 409 PRINTS DnaJ domain signature 75 94 IPR001623 -
Cmo04g01569 409 Coils Coil 288 329 - -
Cmo04g01569 409 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 407 - -
Cmo04g01569 409 SUPERFAMILY Chaperone J-domain 17 93 IPR036869 -
Cmo04g01569 409 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 4 407 - -
Cmo04g01569 409 Pfam DnaJ domain 18 80 IPR001623 -
Cmo04g01569 409 MobiDBLite consensus disorder prediction 352 371 - -
Cmo04g01569 409 MobiDBLite consensus disorder prediction 375 396 - -
Cmo04g01569 409 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Cmo04g01569 409 SMART dnaj_3 17 75 IPR001623 -
Cmo04g01569 409 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01569 Cmo15g00961 CCT
Cmo04g01569 Cmo04g02170 CCT
Cmo04g01569 Cmo18g01016 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01569 Cmo-Chr4:8025863 Cmo05g00908 Cmo-Chr5:6961583 1.30E-177 dispersed
Cmo15g00961 Cmo-Chr15:5006819 Cmo04g01569 Cmo-Chr4:8025863 0 wgd
Cmo04g01569 Cmo-Chr4:8025863 Cmo04g02170 Cmo-Chr4:15800030 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01569 - - csv:101217482 768.459