Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01579 ATGAATAAAAACAAACCAACACATGCAGCTGGGCTTCAACGTAATCTGCAGATTTGCTTCCTCCGCGATGAAACGACTGCGACTATGACACCCTATATTTCCACTTTTTCTTCTCAATCCTTAATGGATTTGCATACATCAAATATTGTGTTTGTATTGAATTTAAGTGTAGTTGAGCTGAGGTTTGTATGTCAGTCGGTCGGCAAGTTGGCAGCCAATGAGAAGAAACACGGCGCTGGAGCTTGTGCGGTGATTGATGGAGGTTTCGCCACGCAGCTTGGGAAACACGGCGCTGTCATTGACGATCCACTTTGGAGCGCCGTTTGCCTCATCAATGATCATGACCTGATCAAGAAGGGCCATTTGGAGTACTTGGAGGCAGGGATAAATATTTTGGTTTCTTCGTCTTACCAGATTGCCATCACAAGCATCCATTGGAAGCTATGGTGCTTATCTGCTGATGGCTCAGAGTACAGTGGGCATTACGGGCCAGATGTGAATGTGGATAAGTTGAAGGATTTTCATCGGCGCAGATTGCAGATTCTTGTTGATGCAAGCCCAGATTTGGGATCAAGCTCCGTAGATGGCGAGAATGCACCGTCGGGAGAGAGCTTCAAGAAGTGCCTTCATGCCATTAATAAAAGTGACAAAGTAACTGCAGTTGGCATAAACTGTACACCTCCTCACTTTATTGAAGCTCTGATTTGTAAGTTCGAAGAGTTAACAAACAAGCACATAGTTGTCTATCCCAATAGTGGCGAGGTATGGGATGGCAGAGCCAAGAAATGGCTGCCATCAAATTGTTTTGGTGATGACAAATTTGAATCATTTTAG 834 44.48 MNKNKPTHAAGLQRNLQICFLRDETTATMTPYISTFSSQSLMDLHTSNIVFVLNLSVVELRFVCQSVGKLAANEKKHGAGACAVIDGGFATQLGKHGAVIDDPLWSAVCLINDHDLIKKGHLEYLEAGINILVSSSYQIAITSIHWKLWCLSADGSEYSGHYGPDVNVDKLKDFHRRRLQILVDASPDLGSSSVDGENAPSGESFKKCLHAINKSDKVTAVGINCTPPHFIEALICKFEELTNKHIVVYPNSGEVWDGRAKKWLPSNCFGDDKFESF 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8063977 8069499 - CmoCh04G015790.1 Cmo04g01579 380554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01579 277 PANTHER ZGC:172121 192 277 - -
Cmo04g01579 277 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 1 77 143 - -
Cmo04g01579 277 PANTHER ZGC:172121 153 189 - -
Cmo04g01579 277 PANTHER ZGC:172121 77 143 - -
Cmo04g01579 277 SUPERFAMILY Homocysteine S-methyltransferase 80 265 IPR036589 -
Cmo04g01579 277 Pfam Homocysteine S-methyltransferase 84 141 IPR003726 -
Cmo04g01579 277 Pfam Homocysteine S-methyltransferase 194 264 IPR003726 -
Cmo04g01579 277 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 1 192 277 - -
Cmo04g01579 277 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 1 153 189 - -
Cmo04g01579 277 Gene3D - 189 276 IPR036589 -
Cmo04g01579 277 Gene3D - 71 146 IPR036589 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01579 K00547 mmuM, BHMT2; homocysteine S-methyltransferase [EC:2.1.1.10] - csv:101218830 310.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01579 Cmo18g01031 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01579 Cmo-Chr4:8063977 Cmo17g00211 Cmo-Chr17:1236318 1.18E-48 dispersed
Cmo18g01031 Cmo-Chr18:11082401 Cmo04g01579 Cmo-Chr4:8063977 1.73E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g306 . . . . . . Bma14g01711 . Cmo04g01579 Cmo18g01031 . Cma18g01021 Car04g01560 Car18g00940 Sed06g1889 Cpe09g00302 Cpe01g01343 Bhi07g01323 Tan04g0851 Cmetu10g0078 Lac13g0497 Hepe01g1191 . . Cla05g02299 Cam05g2472 Cec05g2494 Cco05g2537 Clacu05g2467 Cmu05g2329 Cre05g2446 Cone13ag0830 Cone19ag0835 . . Lsi04g00254 Csa05g02612 Chy10g01147 Cme10g00260 . Blo11g00847 Bda07g01538 . Bpe11g01702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0049991 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01579 Cmo_Chr04 FPKM 1.830309 0.0 0.918353 0.76772 0.0 0.0 1.449202 1.726962 0.960376 1.210971