Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01591 ATGGACGGGATTTGCATTGACCAAACCACTTCCACTGAATCCCAATCCACAAATTTCCCCCTCCTCAAATCTCCACCGCCGGAGACTAGTCTCTGCCGCGTCGGGAGTGGCTTCACTAGTGTTGTTCTCGACTCTGACTCATGCGGCGTCGAGGCGGAGTCACGGAAATTGCCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAACGGCCGCTGGGGCGCACAGATTTACGAGAAGCATCAGAGAGTATGGTTGGGGACTTTCAATGAAGAGGAAGAAGCAGCACGTGCATACGATGTCGCTGCCCAACGCTTCCGCGGCCGTGACGCTGTCACCAATTTTAAAGATGAAGACGACGACGACGACGTATCGGCCTTCCTCAACTCCCATTCCAAAGCAGAGATCGTGGACATGCTACGTAAACACACCTACCTACACGAGCTCCATCAAAGCAAACGAAACGCCGGGTTATCCGGTTTAGATCGCAAACATAACCGTTCGTTGTCCGGGTTGGATTCGGACGCTCGCGAACTTCTATTCGAAAAAGCCGTAACCCCAAGCGATGTAGGAAAATTGAACCGTCTCGTCATCCCAAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCACCGCTTCCTCGAAAGGTCTGTTGTTGAACTTCGAGGACGGAGGAGGCAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAAAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAAGCCGGTGACATTGTGAGCTTCCTCAAATCTCCCGGACAGGACAAACAGCTGTACATCGAATGGAAGTCCAGAAAGGCGTCGCCCACAACCGACCCCAACATGAACCCGGTTCACATCGTCCGACTCTTCGGAGTTGACATCGTCAAAGCTTCTTCGCCAAACACTGGGTGCGGCGAGAAGAGGAGAGAATTGGAATTTCTCGCTTTTCAATGTACCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1029 51.8 MDGICIDQTTSTESQSTNFPLLKSPPPETSLCRVGSGFTSVVLDSDSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDVAAQRFRGRDAVTNFKDEDDDDDVSAFLNSHSKAEIVDMLRKHTYLHELHQSKRNAGLSGLDRKHNRSLSGLDSDARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSPGQDKQLYIEWKSRKASPTTDPNMNPVHIVRLFGVDIVKASSPNTGCGEKRRELEFLAFQCTKKQRIVGAL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8109511 8110539 + CmoCh04G015910.1 Cmo04g01591 380566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01591 342 CDD B3_DNA 180 268 IPR003340 GO:0003677
Cmo04g01591 342 MobiDBLite consensus disorder prediction 1 20 - -
Cmo04g01591 342 Gene3D AP2/ERF domain 60 117 IPR036955 GO:0003700|GO:0006355
Cmo04g01591 342 CDD AP2 60 115 IPR001471 GO:0003700|GO:0006355
Cmo04g01591 342 Gene3D - 170 294 IPR015300 -
Cmo04g01591 342 SUPERFAMILY DNA-binding domain 60 117 IPR016177 GO:0003677
Cmo04g01591 342 Pfam AP2 domain 61 108 IPR001471 GO:0003700|GO:0006355
Cmo04g01591 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 342 IPR044800 GO:0003700
Cmo04g01591 342 SMART B3_2 181 286 IPR003340 GO:0003677
Cmo04g01591 342 ProSiteProfiles B3 DNA-binding domain profile. 181 286 IPR003340 GO:0003677
Cmo04g01591 342 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 342 - -
Cmo04g01591 342 SMART rav1_2 61 122 IPR001471 GO:0003700|GO:0006355
Cmo04g01591 342 Pfam B3 DNA binding domain 181 285 IPR003340 GO:0003677
Cmo04g01591 342 ProSiteProfiles AP2/ERF domain profile. 61 116 IPR001471 GO:0003700|GO:0006355
Cmo04g01591 342 SUPERFAMILY DNA-binding pseudobarrel domain 179 284 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01591 Cmo-Chr4:8109511 Cmo15g01051 Cmo-Chr15:6789326 8.97E-136 dispersed
Cmo18g01060 Cmo-Chr18:11230116 Cmo04g01591 Cmo-Chr4:8109511 6.02E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9637 PF02362 B3 1.20E-27 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01591 K09287 - csv:101203784 570.466