Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01609 ATGCGTGGGGAAGATCAGGAAGAGGAACATCATCAGCAACAACAGGAGTGTTCACAAACAATTGAGAATATGTTTCAACAACAGCTTCTTCTCCACCAACACCTACAAAACAACGACGACGACGACAACAACAACGGAGACCATCATCATGGAACTGGAAGAGGGTTAATTTTTCCACCCGAACTCGTGTCGCCGGTTCTCCAGCCGTGGTCGTCGCTTAACCCTTTTATGATCCCTCCCCCACCATCGTTGCCATGTTCATCATCATCATCCTATGGTGGTTTGTTTAACCGGAGACCACCTAATTGTGTTCAGTTTGCTTATGATGGTTCCTCTTCCGCGGACCACCTAGGTCAGATCATATCCACCACGCTTGGACCCGTGGTTCATCCTGGCTCCATGGCTCCCTTTGGGCTACAAGCTGAGCTTGGTAAAATGAGTGCGCAAGAAATTATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGGAGAAGAGAAAGAATCAACAACCATCTGGCTAAGCTCAGGAGCTTACTCCCTAATACCACTAAAACGGACAAAGCTTCACTACTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAACGACAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGGTAACAGTGGACGATGCCTCAGAGGAGATGATGATAAGTGGAGCCAAATTTGTAATAAAGGCTTCCCTTTGCTGCGAGGACCGCTCTGATCTCCTCCCTGACCTCATCAAAGCCCTGAAATCCTTGCGTTTAAGAACCCTCAAAGCTGAAATCACGACGCTTGGTGGGCGTGTAAGAAATGTGTTGTTTATCACTGCTGAAGAAGAGCAACAACACGGTCCCGAACAGCAACACAATATGAGCTCTATTCAAGAAGCACTCAAAGCTCATAATTCTCTCGAATCCGACGTCGGACCTGCTGCTGTGGTCTTGCATCTTCGCGAAGGCCGCGATCGATTTCTGAAGATGAAGATTTTTGTCAAGACTCTCAAGGGCTCGCACTTCGAAATCGAAGTTAAGCCTGAAGATATGGTTGCTGATGTGAAGAAGAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCTCAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGACGGCACAACACTGGACGAAAATAAAGTTTCCGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTTCATCGGGTGCGACATCTTCTACCACACAAGCTGCGCCAGTATCGAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCCACTCCAGTGTCAACGTCGGAAGTTCCTCTACCAACGTCAGCACCGCCTGCTACTGTTACCGACTCTACTCCTCCCGCTCCTCCGGCTCTGGCTCCAGCTCCAGCTCCGTCTCCAGCTGCAGTTCCTGCAACCACTGTTTTGGCAGAATCCGATGTCTACAGCCAAGCAGCTTCTAACCTGGTTGCTGGTAGTAACTTGGAGGACACTATCCAACAAATTCTTCTCATGGGCGGAGGGATTTGGGACAGAGACACTGTTGTTCGAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAACTTGAAACCCCACCTGCTGCTGGAGTTCCGTCTACTGTGCAAGCGACCAACCCTTCAGCCCAACCTGCACAGCCAGCCCAACCTGCACAGCCAGCCCAGCCTGCATCTGTGACGTCAACTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTTTGCCTAATATATCTTCCGGAGCTGTTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTGCGAGCTAATCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGTTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGGCAGCTTGCTGAGGCTATGCCGCAGGCTATAACTGTAACCCCGGAGGAGCGTGAAGCCATTCAACGGCTTGAGGATTTGGGCTTCGACAGAGCTCTAGTAGTGGAGGTTTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCCAACTATCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAG 2259 47.76 MRGEDQEEEHHQQQQECSQTIENMFQQQLLLHQHLQNNDDDDNNNGDHHHGTGRGLIFPPELVSPVLQPWSSLNPFMIPPPPSLPCSSSSSYGGLFNRRPPNCVQFAYDGSSSADHLGQIISTTLGPVVHPGSMAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDEVTVDDASEEMMISGAKFVIKASLCCEDRSDLLPDLIKALKSLRLRTLKAEITTLGGRVRNVLFITAEEEQQHGPEQQHNMSSIQEALKAHNSLESDVGPAAVVLHLREGRDRFLKMKIFVKTLKGSHFEIEVKPEDMVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVSENSFIVIMLTKNKSSSGATSSTTQAAPVSKAPQNTAPAPAATPVSTSEVPLPTSAPPATVTDSTPPAPPALAPAPAPSPAAVPATTVLAESDVYSQAASNLVAGSNLEDTIQQILLMGGGIWDRDTVVRALRAAYNNPERAVDYLYSGIPEQLETPPAAGVPSTVQATNPSAQPAQPAQPAQPAQPASVTSTGPNANPLDLFPQGLPNISSGAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8196424 8208005 - CmoCh04G016090.1 Cmo04g01609 380584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01609 752 SMART finulus 164 213 IPR011598 GO:0046983
Cmo04g01609 752 MobiDBLite consensus disorder prediction 420 484 - -
Cmo04g01609 752 MobiDBLite consensus disorder prediction 36 57 - -
Cmo04g01609 752 Pfam Ubiquitin family 344 417 IPR000626 GO:0005515
Cmo04g01609 752 MobiDBLite consensus disorder prediction 420 464 - -
Cmo04g01609 752 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 213 IPR036638 GO:0046983
Cmo04g01609 752 SMART uba_6 513 553 IPR015940 -
Cmo04g01609 752 SMART uba_6 705 742 IPR015940 -
Cmo04g01609 752 Gene3D - 153 213 IPR036638 GO:0046983
Cmo04g01609 752 Pfam XPC-binding domain 625 680 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cmo04g01609 752 PRINTS DNA repair protein Rad23 signature 716 730 IPR004806 GO:0006289
Cmo04g01609 752 PRINTS DNA repair protein Rad23 signature 731 746 IPR004806 GO:0006289
Cmo04g01609 752 PRINTS DNA repair protein Rad23 signature 699 715 IPR004806 GO:0006289
Cmo04g01609 752 PRINTS DNA repair protein Rad23 signature 651 673 IPR004806 GO:0006289
Cmo04g01609 752 ProSiteProfiles Ubiquitin domain profile. 342 420 IPR000626 GO:0005515
Cmo04g01609 752 MobiDBLite consensus disorder prediction 565 581 - -
Cmo04g01609 752 CDD UBA1_Rad23_plant 507 556 - -
Cmo04g01609 752 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 511 554 IPR015940 -
Cmo04g01609 752 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Cmo04g01609 752 SMART ubq_7 342 416 IPR000626 GO:0005515
Cmo04g01609 752 Gene3D - 506 556 - -
Cmo04g01609 752 Gene3D - 339 421 - -
Cmo04g01609 752 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 342 748 - -
Cmo04g01609 752 MobiDBLite consensus disorder prediction 561 603 - -
Cmo04g01609 752 Gene3D - 616 680 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cmo04g01609 752 CDD Ubl_Rad23 342 415 - -
Cmo04g01609 752 SUPERFAMILY UBA-like 510 557 IPR009060 GO:0005515
Cmo04g01609 752 TIGRFAM rad23: UV excision repair protein Rad23 342 748 IPR004806 GO:0006289
Cmo04g01609 752 CDD bHLH_AtAIG1_like 153 230 - -
Cmo04g01609 752 Gene3D - 697 744 - -
Cmo04g01609 752 MobiDBLite consensus disorder prediction 465 484 - -
Cmo04g01609 752 SMART CBM 623 666 IPR006636 -
Cmo04g01609 752 Pfam Helix-loop-helix DNA-binding domain 161 207 IPR011598 GO:0046983
Cmo04g01609 752 SUPERFAMILY XPC-binding domain 621 686 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cmo04g01609 752 MobiDBLite consensus disorder prediction 588 603 - -
Cmo04g01609 752 PANTHER UV EXCISION REPAIR PROTEIN RAD23 342 748 - -
Cmo04g01609 752 SUPERFAMILY UBA-like 685 746 IPR009060 GO:0005515
Cmo04g01609 752 SUPERFAMILY Ubiquitin-like 342 420 IPR029071 -
Cmo04g01609 752 Pfam UBA/TS-N domain 705 740 IPR015940 -
Cmo04g01609 752 Pfam UBA/TS-N domain 513 551 IPR015940 -
Cmo04g01609 752 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 702 743 IPR015940 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01609 Cmo18g01065 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01609 Cmo-Chr4:8196424 Cmo04g02109 Cmo-Chr4:13557420 6.81E-90 dispersed
Cmo15g00155 Cmo-Chr15:721020 Cmo04g01609 Cmo-Chr4:8196424 6.68E-29 dispersed
Cmo20g00239 Cmo-Chr20:1161412 Cmo04g01609 Cmo-Chr4:8196424 8.37E-33 dispersed
Cmo01g00199 Cmo-Chr1:891556 Cmo04g01609 Cmo-Chr4:8196424 3.59E-136 transposed
Cmo05g00575 Cmo-Chr5:2835064 Cmo04g01609 Cmo-Chr4:8196424 3.81E-31 transposed
Cmo14g01062 Cmo-Chr14:5821506 Cmo04g01609 Cmo-Chr4:8196424 1.10E-134 transposed
Cmo18g01065 Cmo-Chr18:11283669 Cmo04g01609 Cmo-Chr4:8196424 2.03E-139 wgd
Cmo18g01038 Cmo-Chr18:11121436 Cmo04g01609 Cmo-Chr4:8196424 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9639 PF00240 ubiquitin 2.50E-17 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01609 K10839 - csv:101220491 632.098