Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01614 ATGTGCTCTTCTTCTTCTTTTGCATCTACCTTTTCTCTATTCCCTGCGAAGTCGCCGTCGATTTCACGACGACACAATGTTATTCCGCCCTACTCGCATCTGTTCCTCGGCCATCTCAGGCCCACTAACTCTAAATTTCGTATTGCTGCTTCAATTACTGAAAGAGACCTCGAGCTCTCGTCTTGGCTTAATCCCGACCATCCCAACAACGACGGCTATGGTGGCTGGATATTTCTCAACTCTCCAACCAGCGACGCAAAAACCGAGAGACGAGGGGTGCCTCGTTTCGTAATAGGCGTGGTCGGGACCTCGCTTGTTGTTTTGTTCGCAGCCATTTCTCACATTTCACTATCTAGACGAGGGTTTAAGTTCCAGTGGCGTACTCCTTTGAGATCATTAGAAGGGGTATTTAGTCGTATGGAAAATGAAAGCGATCAAGGCAAAACAGTGGAGGATAGTTTAACCAATCACGACCTACCGACTGAATCTGGTGCTGAGTCTATGCTTGATTCTAAGGTTTATGACGCTGTTACTTCAGATTCTGGAAATAAGCCTGAACGAGTTATAATTACCACTCCTGTGGATTCTGCTCAAGATGAAGCTTTATCGATTTTGAAGAAACTGAAGGTTATTGAAGATGATATTGATGCTGGAGAGTTGTGTAGTAGAAGAGAATATGCAAGGTGGCTAGTTCATATGTATTCGTCACTGGAAAGGAATCCAAAACACCATATTATTCCATCAGTTTTGCTTTCTGGGTCAACAATTGCTGCCTTTGATGATATAAGTATGGAAGATCCTGATTTTGAGTCCATTCAAGCTCTAGCAGAAGCTGGTATCATACCCAGCAAGTTATCACCAAACTACGGATATGATGGCTTGGGAGATCGGGAGAAAACCTACTTTTTTCCTGAGAGGTTTGTATCTCGCCAGACCTTGATCGACTGGAAAGCCCAGTTAGATTATGAGGTTGTTCCTGGAATACTAGAACGGATATCAAGTACAAAGGTGGGTTTTATGGACTTGAAGGAGATCAGTTCAGAAGCATCGCCACAATTGTTCATGGATATTTTAGCTGGGGAGAGAAGCATTCACAGAAAAGTTTTTGGTCAAATCAAACGGTTTCAACCGAACAAACCTTCAACAAAAGCACAAGTAGCAGTTGCACTGGTAAGTGGCAGGATGGCAGAAGCAATCTCTTTTGAATTATCAAGACTGGAATCAGAGAGATCTGCTAGAAAAGCTGAGATAGAAGATATCAAGTTGGAATTGTTAGAAAGAGGAGACATACAAAGGTATTGGGATAAGAAGCTAACTGAGGAGAAAGAACGCCTGATCAAGGTGGAGGAGCTTTATCTTACCGCTATCAGCGATTTGGGAGAGCAGAAGATGGTTCAAGAGAAGTTTTTTTCTGAGTATTTAAAGGAAAAGGCATCTATAAACTGTCAGAGGCAATTGCTTCTCAGCCTTAAGGAAGAAGTTGATGGGATGACAGAAAAGCTTCTTTCTGAGAGATCTGTATGTGAGGCAGAGAAGAGTGAGCTACACGATATGCACGCCCGTTTACAGAGCCAGCTTGAAGTAACGCTTGATACGAAATCTGTGCTTGAAGCTGAGAAAGAAGCTCTCCGTATTCTTAGATCTTGGGTAGAAGATGAAGCAAGGAAGAGTCAAGCTCGTGCAAAGGTTCTTGAGGAGGTCGGACGAAGGTGGAAATGGGACGATCAAGCTTGA 1734 43.31 MCSSSSFASTFSLFPAKSPSISRRHNVIPPYSHLFLGHLRPTNSKFRIAASITERDLELSSWLNPDHPNNDGYGGWIFLNSPTSDAKTERRGVPRFVIGVVGTSLVVLFAAISHISLSRRGFKFQWRTPLRSLEGVFSRMENESDQGKTVEDSLTNHDLPTESGAESMLDSKVYDAVTSDSGNKPERVIITTPVDSAQDEALSILKKLKVIEDDIDAGELCSRREYARWLVHMYSSLERNPKHHIIPSVLLSGSTIAAFDDISMEDPDFESIQALAEAGIIPSKLSPNYGYDGLGDREKTYFFPERFVSRQTLIDWKAQLDYEVVPGILERISSTKVGFMDLKEISSEASPQLFMDILAGERSIHRKVFGQIKRFQPNKPSTKAQVAVALVSGRMAEAISFELSRLESERSARKAEIEDIKLELLERGDIQRYWDKKLTEEKERLIKVEELYLTAISDLGEQKMVQEKFFSEYLKEKASINCQRQLLLSLKEEVDGMTEKLLSERSVCEAEKSELHDMHARLQSQLEVTLDTKSVLEAEKEALRILRSWVEDEARKSQARAKVLEEVGRRWKWDDQA 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8233022 8237748 - CmoCh04G016140.1 Cmo04g01614 380589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01614 577 Coils Coil 403 423 - -
Cmo04g01614 577 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 9 576 - -
Cmo04g01614 577 Pfam S-layer homology domain 259 281 IPR001119 -
Cmo04g01614 577 MobiDBLite consensus disorder prediction 142 165 - -
Cmo04g01614 577 PANTHER SLH DOMAIN PROTEIN 9 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01614 - - - bhj:120080842 974.156
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01614 Cmo-Chr4:8233022 Cmo18g01276 Cmo-Chr18:12388723 1.04E-25 dispersed
Cmo04g01614 Cmo-Chr4:8233022 Cmo16g00127 Cmo-Chr16:572977 3.06E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g250 . . . . . . . . Cmo04g01614 . . . Car04g01591 . . . Cpe01g01370 Bhi07g01379 . . Lac13g0450 . . . Cla05g02336 Cam05g2510 Cec05g2534 Cco05g2577 Clacu05g2504 Cmu05g2366 Cre05g2483 Cone13ag0862 Cone19ag0862 . . Lsi04g00297 Csa05g02571 . Cme10g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014585 0 1 1 0 1 0 2 1 1 0 0 0 1 1 1 1 0 2 1 1 1 1 0 1 0 0 1 0 0 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01614 Cmo_Chr04 FPKM 8.345406 8.74638 4.420669 5.071334 6.758238 6.893587 5.764373 1.433685 1.786966 1.601761