Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01615 ATGCAGCCGTTGAGGCAGAGCACTGGCGCTACCGCTACCGCAACCGCTGCCGCCTACATTCTCCGATGGCGAACTGACACGAAGACGCGATTTGGATCAATTAAAGCATTGAATGAAGTAAAGAGAAATGGAAAAGGAAATTGCAGCGTTGAAGGTTTTCTAGGGTTTGGAAATGGAGGCACTGAGAGATCCAGTTCACCGGCCGATTCGTATATAGGAAGCTTGATAAGCTTAACTTCCAGGAGTGAGATTAGATACGAAGGTGTTCTTTATAGCATCAACACTGAAGAATCCAGTATCGGACTGAGAAATGTACGTTCATTTGGAACAGAAGGGAGAAAGCAGGAGGGGCCACAAGTCCCACCAAGCGACAAAGTTTTTGAATTCATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAGGTAAAATCTTCTCCACCTGTTCAGACTACACCCTTGATAAACAACGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGTATCTACTTCTTCAAGCTCGCTTCCTCCTGTTAGTGGGCCCTTGCCTGATATTAATTCTCAGGCCATACCTGTTGGAATTCCTGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCAACCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCCCCTTCGCCACCTCCTCCAAATCCAAGTGATGGTGGACTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGGCCCCCTAATGGACTTCCTCACATGCATCAGCAATCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCCGCCACTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGCGCATCAAATCTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCATTCCTAGTTTATCATCCACAACAATGCCACCAGTAACTGTATCTTCAACACTTCCATCTGTGCTGTCAGTTCCACAGGCCTCTGAGATATCATCAAGCTCAATGGCCAGCCAGAAAGTACATTCTGCTCTTCCTCAAGCTCCTCTAAGTTCCAACTTGCCATCGCTCTCTCCTTTGACAGCAAGTTCGGATGTTAGCCTTGTTGTGCCTCCAACTTCTAACAAAACTACTACAGTTTCTGGTCCAGCATTGTCTTATCAAACTATCTCTCAATCTACATCCGCTGTTGTTGGAACATCGATTTCTGTTCTGACAAGTGCGCCTGCACCTACCCTTGTGACTCCAGGCCAGCTCTTGCAAACTACGGTAGTCTCTTCATCTTTGCAGACAGTTCCAAAGGACGTGGAAGTGGTTCAAACATCTTCCTCGTTAGCAGCCGAACAAACTGTTCCAGTTTCAGTGGATACTCAGCCACCATTATTACCGTTACTGGTGTCTCCACGAGCCATTCATAAGCCAAATGATTCAACTTCACAAACTCGGCACATCTACCGGGGACGTGGTAGAGGAGGACGATTTGGGAACTCGCATCAAACAGAAAGATTCACGGAAGATTTTGACTTCATGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCGAAGTTCAATGATGGGGATGAAAAATTCAGTGATGAAGACGATGCCTATGAAGAAGATGATGGTGAATCGTCAAAGTTAGAGATGAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCATGCAACGCTCTTGACCAAGAAGCTCAAAATGGAAGGAGGCCCAGATACTTCGAACAAATGAAGTTGGACACTGAGACATTCGGCGAGTTTGCAAGATTCCGAGGTGGTCGTGGTGGTTTTCATTCTGGTCGTGGTGGCCGTCGTGGTGGTTATTACGGGAGGGGCTATGGCCATGTTGGAAGGGGTCGAGGGCGGGGCATGCATAACTATAACCAGTAG 1947 46.17 MQPLRQSTGATATATAAAYILRWRTDTKTRFGSIKALNEVKRNGKGNCSVEGFLGFGNGGTERSSSPADSYIGSLISLTSRSEIRYEGVLYSINTEESSIGLRNVRSFGTEGRKQEGPQVPPSDKVFEFILFRGSDIKDLQVKSSPPVQTTPLINNDPAIIQSHYPRPVSTSSSSLPPVSGPLPDINSQAIPVGIPGSNFQGGLPLYQPGGNVGSWGASPSPPPPNPSDGGLALPMYWQGYYGPPNGLPHMHQQSLLRPPPGLSLPSSLQPPLQYPNLNASLPTGASNLLEVPSSLFSANPTIPSLSSTTMPPVTVSSTLPSVLSVPQASEISSSSMASQKVHSALPQAPLSSNLPSLSPLTASSDVSLVVPPTSNKTTTVSGPALSYQTISQSTSAVVGTSISVLTSAPAPTLVTPGQLLQTTVVSSSLQTVPKDVEVVQTSSSLAAEQTVPVSVDTQPPLLPLLVSPRAIHKPNDSTSQTRHIYRGRGRGGRFGNSHQTERFTEDFDFMAMNEKFNKDEVWGHLGKNTKSHPKFNDGDEKFSDEDDAYEEDDGESSKLEMKPVYNKDDFFDTLSCNALDQEAQNGRRPRYFEQMKLDTETFGEFARFRGGRGGFHSGRGGRRGGYYGRGYGHVGRGRGRGMHNYNQ 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8238111 8244651 - CmoCh04G016150.1 Cmo04g01615 380590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01615 648 MobiDBLite consensus disorder prediction 472 499 - -
Cmo04g01615 648 SMART LSM14_2 65 165 IPR025609 -
Cmo04g01615 648 ProSiteProfiles FFD box profile. 564 579 IPR025761 -
Cmo04g01615 648 Pfam Scd6-like Sm domain 71 144 IPR025609 -
Cmo04g01615 648 Gene3D - 62 147 - -
Cmo04g01615 648 MobiDBLite consensus disorder prediction 527 559 - -
Cmo04g01615 648 PANTHER SCD6 PROTEIN-RELATED 64 641 - -
Cmo04g01615 648 CDD LSm14_N 68 142 IPR025609 -
Cmo04g01615 648 MobiDBLite consensus disorder prediction 527 542 - -
Cmo04g01615 648 ProSiteProfiles DFDF domain profile. 496 532 IPR025762 -
Cmo04g01615 648 PANTHER PROTEIN DECAPPING 5-LIKE 64 641 - -
Cmo04g01615 648 SUPERFAMILY Sm-like ribonucleoproteins 70 147 IPR010920 -
Cmo04g01615 648 ProSiteProfiles TFG box profile. 587 607 IPR025768 -
Cmo04g01615 648 Pfam FDF domain 503 605 IPR019050 -
Cmo04g01615 648 SMART FDF_2 502 607 IPR019050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01615 K18749 LSM14, RAP55, SCD6; protein LSM14 - csv:101205721 828.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01615 Cmo18g01071 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01615 Cmo-Chr4:8238111 Cmo04g02117 Cmo-Chr4:13736964 0 dispersed
Cmo01g01408 Cmo-Chr1:11073025 Cmo04g01615 Cmo-Chr4:8238111 2.36E-13 transposed
Cmo18g01071 Cmo-Chr18:11314900 Cmo04g01615 Cmo-Chr4:8238111 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01615 Cmo_Chr04 FPKM 0.209524 0.426559 0.59559 0.280173 0.234468 0.722441 0.0 0.450749 0.192116 0.635471