Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01619 ATGAGTTCCTCCAAGCACCAAGAACATAACAATGGCGACTCCCCTTCGAGTTCGAAGCCGGCCAATCCCATTTTGCAACAATTGCTGCAATCCATCACTCTCAAGTTCGAAGATGTGGAGTATAGCGTCAAGTTGAGGAGCCCAAAAGCCACATGCTTTGGTTCAAACGGTGCACCCATTACGCGGACCATTCTGAATGGCGCAACCGGAATGGTCCGGCCGGGAGAGGTTCTGGCAATGCTTGGCCCATCTGGCAGCGGCAAGACTACCCTCCTTACCGCCCTTGCTGGCCGTCTTTCGGGAAATATCACCGGCAACATAACCTACAATGGCAACCCATTTTGTGGCTCCATCAAACGCAACATTGGGTTTGTCCCACAGGACGACTTGTTCTATGCTCACTTGACAGTGGTGGAAACTCTGACTTATGCAGCTATGTTAAGGCTTCCCAGAACGCTTACGAAGGCAGAGAAATTGGAGCAGGTTGAAATGGTAATCAACGAGATGGGTTTGTCGAAATGCCGGAATGTTTGGATTGGGAGTCCTCTGTTACGGGGAATTTCTGGTGGGGAACGAAAACGGGTTAGTATTGGACATGAGATTATAATGAACCCGAGTGTTGTAATGCTGGATGAGCCCACTTCAGGGCTTGACTCTACCACGGCTGAGCGCATTGCTGGGACGTTGCGGCGACTGGCTCGAGGCGGTCGGACGGTGGTGATGACAATCCATCAGCCGTCGGCTAGAATCTATGCGATGCTTGATAAGGTGCTGGTCATGTCGGAGGGATCGTCCATATACTCGGGGGATGCCGGTCGAGTCGTTGAGTATTTCGAGTCCATTGGATATGGTGCTCATGGGGGGCTCAACTTTGTGAATCCTGCTGATTTTCTTCTTGATCTTGCTAATGGCATTGCATTTGCATCTGATACAAAAGAAGATGATACCCAACAGGGGGAGTTTCCTGAGGATCGTCAAACAGCAATCAAGCAATCTCTGATATCCATTTACAGAACCAACTTATACCCATCATTGAAGGCCGAGATTCAAGCGGAGCCTCAATCGGAATCACCTCCATTATTCACCAGCCAACAAGAACGATGGGCGTGTAGCTGGTGGGATCAATTTGTGGTGTTGCTAAGTAGAGGGTTAAAAGAAAGGAAACATGAATCCTACTCTGGCTCAAGGATTTTCCATACCATGTCAATCTCAATCATTGCAGGTATTCTCTGGTGGCGATCGAGCATCTCAAACCTTCAAGATCAGGTTGGACTCCTATTCATCTTCGCCGTTAACTCGAGCATTCTTGCTATTTACATGGCGGTTTTCGAGTTCCCAAAAGAGCAATCGATTCTCAACAAAGAGCGAGCCTCCAGTATGTACCGTCTCTCTTCTTACTTCATGGCTCGAACAGTCATCGACTTGCCGATGGAGCTGCTATTACCGGCCATGTTCGTGACAGTACCTTACTGGATGAGTGGCCTAAAACCATCGGCATCCAAATTTATTCTGACCCTTTTGGTCACTCTTCTCAACGTGCTGACCGCTCAAGGGCTAGGCCTCGCACTTGGGGCCATTCTGATGGACGCAAAACAGGCTTCGACCTTTGCTTCTGTTATAACCGTGGGGTTTCTGATGCTGGGAGGGTTCTACATTGGACATCTCCCAGGCTTCATAGCTTGGTTGAAATATCTGTCATACTGTCACCACGCCTTTAAGCTTCTTCTGGGAATTCAATACACAGAAAATGAGACTTACGGCTGTGGGGCTGGGCTGCAATGTCGAGTAATGGATTTTCCTTCTATCAAGCTTGTGGGTGTTGGCGGCAACTGGCTGAGCGTGGCTGTTTTGGTACTAATGGCGGTTGGGTTTAGGGTCGTGGCTTATGTTGCTTTGAGGGTGGGGCAGCCTTTATGGCCCCGATTCAAACTTATTTTCCTCAAACATTTACGATCTTGA 1959 48.85 MSSSKHQEHNNGDSPSSSKPANPILQQLLQSITLKFEDVEYSVKLRSPKATCFGSNGAPITRTILNGATGMVRPGEVLAMLGPSGSGKTTLLTALAGRLSGNITGNITYNGNPFCGSIKRNIGFVPQDDLFYAHLTVVETLTYAAMLRLPRTLTKAEKLEQVEMVINEMGLSKCRNVWIGSPLLRGISGGERKRVSIGHEIIMNPSVVMLDEPTSGLDSTTAERIAGTLRRLARGGRTVVMTIHQPSARIYAMLDKVLVMSEGSSIYSGDAGRVVEYFESIGYGAHGGLNFVNPADFLLDLANGIAFASDTKEDDTQQGEFPEDRQTAIKQSLISIYRTNLYPSLKAEIQAEPQSESPPLFTSQQERWACSWWDQFVVLLSRGLKERKHESYSGSRIFHTMSISIIAGILWWRSSISNLQDQVGLLFIFAVNSSILAIYMAVFEFPKEQSILNKERASSMYRLSSYFMARTVIDLPMELLLPAMFVTVPYWMSGLKPSASKFILTLLVTLLNVLTAQGLGLALGAILMDAKQASTFASVITVGFLMLGGFYIGHLPGFIAWLKYLSYCHHAFKLLLGIQYTENETYGCGAGLQCRVMDFPSIKLVGVGGNWLSVAVLVLMAVGFRVVAYVALRVGQPLWPRFKLIFLKHLRS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8259671 8261943 + CmoCh04G016190.1 Cmo04g01619 380594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01619 652 Pfam ABC-2 type transporter 375 580 IPR013525 GO:0016020|GO:0140359
Cmo04g01619 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 17 635 - -
Cmo04g01619 652 Gene3D - 50 281 IPR027417 -
Cmo04g01619 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 287 IPR003439 GO:0005524
Cmo04g01619 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 280 IPR027417 -
Cmo04g01619 652 Pfam ABC transporter 67 215 IPR003439 GO:0005524
Cmo04g01619 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 17 635 - -
Cmo04g01619 652 MobiDBLite consensus disorder prediction 1 22 - -
Cmo04g01619 652 SMART AAA_5 74 264 IPR003593 -
Cmo04g01619 652 Pfam ABC-2 type transporter 244 316 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01619 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - egr:104453835 741.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01536 Cmo-Chr4:7855576 Cmo04g01619 Cmo-Chr4:8259671 5.22E-89 dispersed
Cmo04g01619 Cmo-Chr4:8259671 Cmo15g01499 Cmo-Chr15:10169617 0 dispersed
Cmo18g00981 Cmo-Chr18:10800948 Cmo04g01619 Cmo-Chr4:8259671 5.74E-88 dispersed
Cmo04g01619 Cmo-Chr4:8259671 Cmo04g00647 Cmo-Chr4:3214782 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01619 Cmo_Chr04 FPKM 0.129988 0.080027 0.409192 0.468614 3.485864 3.004195 2.213329 0.418617 0.387175 0.532156