Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01621 ATGTGCTGTCGAGAATCAGTACGAAGCACATCCTTTTTCCATCCCATAAATAATGGCCTTACCCTCTTCCATTCACCACTCACAACAACCCCTTCTTCTTCTTCCTCCTCCTCTTACCTCTCTCAGACTCTGCTACTGACAGAGTACACCAACATGGTCAAATTCTCCAAGCAGTTCGAGGGACAGCTGATCCCTGAATGGAAACATGCTTTTGTCGATTATCGACAACTAAAGAAGGACCTTAAGAAACTATATCTTCTTAAAACTGATACCAATCCCGCCGCCGGTACGGCGCCAAGTACCCTCTTGTCTTCCATAAAAAAGCTCTCTTTTTTTGGTCACCAACGCAGAGATCATGGACCTATTCATGTTCATAAGAAACTTGCTTCCTCTGCTAGCAAGGGCGATATGTATGAAACAGAGCTGCTCGACCAATTTGCCGACACAGCTGCAGCTAAGAATTTCTTCTCATGTCTGGATTTCCAGCTTAATAAAGTGAATCAATTCTTCAAGACAAAGGAGGCGGAGTTCATGGAGAGAGGAGATAGCTTGAAGAAACAGCTGGAGATTCTCATTGACCTGAAAACGGCGATTCAGTGCCGGCAACAGACCGGCGATATTGCAGCTGATTCTAAGGAGGATGGTTCCATCTCCTACACGATTTCTTGTGAGGACAAAACAGAGCAAGAACAGTCCCAAGAGAACAATATCAATGACGAATTGGAGAAGACAGAGTTGGCATTTTCAGACTCGCCAAGATCCGAAGAAATGGGAAATCCGACAAGAACTAAAATCTTGGATCGTAAATGGAGATCATTTTCCGGTCGGGTGATCAGTTTTCAAGGGAAGAACATAAAAATGAACATTCCTCTGACAAACCCATCTCGGACTTTCTCTGCTATAAGCCATTTATTCAGGGAAGATTTGGCGAACTCAAAGAAATGCAATGATGGAACAAAACTTCATATTAACAAGACCAGGTTGCACCATGCAGAGAAGATGATCAAAGGAGCTTTTGTTGAGCTGTATAAGGGGCTGGGGTTTCTCAAAACTTACAGGCAATTGAATTTGCTTGCCTTTATAAAGATTTTGAAGAAGTTTGATAAAGTCACTGGAAAACAAGTTCTTCCCATTTATCTGAAAGTTGTGGAAAGTTCTTATTTCAACAGCTCAGACAAGGCTATAAAGCTAGCAGATGAGGTAGAGGAGCTGTTCATCAAAAACTTTGCTGAGGATGACAAAAGAAAGGCCATGAAATACCTTAAACCAAAGCAGCGTAAAGAGTCACACGGCATTACCTTCTTCGTCGGACTGTTCACTGGTTGCTTCATTGCGCTTCTAGCTGGTTATGTTATCATGGCTCATATCATGGGGACGTACAAAAGGCACCCTTTCTCTCTTTACATGGAGACTGTCTATCCAATACTTAGCATGTTCAGCTTGATGTTCTTGCATTTCTTCCTCTATGGCTGCAACATCTTTGCATGGAGAAAGACTCGGATCAATTACAGCTTCATTTTCGAGCTATCCGCGACGAAGGAACTTAAATATCGAGACGTGTTCTTGATATGTACCACTTCAATGACTGCTGTTATTGGTGTCATGTTTGTTCATTTGACACTGCTTTCAAAAGGCTACTCTTATACTCAAGTTCAAGTCATCCCTGGCCTTCTCTTGTTGATGTTCTTGCTGCTACTCGTGTGCCCCTTCGACGTTTATTATCGATCGAGTCGCTACTGTTTCCTATGTGTGATCAGAAATATAGCGTTTTCACCTCTTTACAAGGTAGTGATGATGGACTTCTTCATGGCTGATCAGCTATGTAGTCAGGTCCCGTTGCTGCGAAACCTCGAGTACATGGCCTGTTACTACATAACAGGAAGCTACAAAACACAGAATTACAACTACTGTATGAACGGAAAGCATTACCGAGATCTCGCTTATGCCGTTTCGTTTCTACCTTACTACTGGAGAGCAATGCAGTGTGCAAGGCGCTGGTTTGATGAGGGACAAACAAGCCACCTTGTGAATCTAGGAAAGTATGTGTCTGCAATGTTGGCTGCTGGGGCCAAAGTGGCATATGAGAAAGACAAGGCCAAAGGAGTTGGATGGCTATGTCTTGTGGTGGTCATGTCAAGTGGAGCAACAGTGTACCAATTGTATTGGGACTTTGTAAAGGATTGGGGATTGCTTCAAGTGAACTCCAAAAATCCATGGCTTAGGAATGATCTAATGCTTAAACGAAAGACCATTTACTACTTCTCCATGGGCTTGAACTTCATGCTTAGACTTGCATGGCTGCAAACTGTTCTTCATTCAACTTTTGGACATGTTGATTCAAGAGTTACTGGACTGTTCTTAGCAGCTCTTGAAGTCATTAGAAGAGGGCTGTGGAACTTTTTCAGGTTGGAGAATGAGCATCTTAATAATGCTGGAAAATTTAGAGCAGTTAATCCAGTGCCACTTCCATTTGATGAAGTTGATGAGGTAGAGTGA 2496 42.71 MCCRESVRSTSFFHPINNGLTLFHSPLTTTPSSSSSSSYLSQTLLLTEYTNMVKFSKQFEGQLIPEWKHAFVDYRQLKKDLKKLYLLKTDTNPAAGTAPSTLLSSIKKLSFFGHQRRDHGPIHVHKKLASSASKGDMYETELLDQFADTAAAKNFFSCLDFQLNKVNQFFKTKEAEFMERGDSLKKQLEILIDLKTAIQCRQQTGDIAADSKEDGSISYTISCEDKTEQEQSQENNINDELEKTELAFSDSPRSEEMGNPTRTKILDRKWRSFSGRVISFQGKNIKMNIPLTNPSRTFSAISHLFREDLANSKKCNDGTKLHINKTRLHHAEKMIKGAFVELYKGLGFLKTYRQLNLLAFIKILKKFDKVTGKQVLPIYLKVVESSYFNSSDKAIKLADEVEELFIKNFAEDDKRKAMKYLKPKQRKESHGITFFVGLFTGCFIALLAGYVIMAHIMGTYKRHPFSLYMETVYPILSMFSLMFLHFFLYGCNIFAWRKTRINYSFIFELSATKELKYRDVFLICTTSMTAVIGVMFVHLTLLSKGYSYTQVQVIPGLLLLMFLLLLVCPFDVYYRSSRYCFLCVIRNIAFSPLYKVVMMDFFMADQLCSQVPLLRNLEYMACYYITGSYKTQNYNYCMNGKHYRDLAYAVSFLPYYWRAMQCARRWFDEGQTSHLVNLGKYVSAMLAAGAKVAYEKDKAKGVGWLCLVVVMSSGATVYQLYWDFVKDWGLLQVNSKNPWLRNDLMLKRKTIYYFSMGLNFMLRLAWLQTVLHSTFGHVDSRVTGLFLAALEVIRRGLWNFFRLENEHLNNAGKFRAVNPVPLPFDEVDEVE 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8275358 8280680 + CmoCh04G016210.1 Cmo04g01621 380596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01621 831 ProSiteProfiles SPX domain profile. 53 381 IPR004331 -
Cmo04g01621 831 Pfam SPX domain 122 383 IPR004331 -
Cmo04g01621 831 Pfam SPX domain 53 86 IPR004331 -
Cmo04g01621 831 Coils Coil 223 244 - -
Cmo04g01621 831 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 53 829 - -
Cmo04g01621 831 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 1 53 829 - -
Cmo04g01621 831 CDD SPX_PHO1_like 54 377 IPR034092 -
Cmo04g01621 831 ProSiteProfiles EXS domain profile. 638 831 IPR004342 GO:0016021
Cmo04g01621 831 Pfam EXS family 473 808 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01621 K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 - csv:101206666 1437.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01621 Cmo18g01077 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01621 Cmo-Chr4:8275358 Cmo14g01867 Cmo-Chr14:14035929 0 dispersed
Cmo18g01077 Cmo-Chr18:11346562 Cmo04g01621 Cmo-Chr4:8275358 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g223 Blo01g00437 . . . . . Bma14g01687 . Cmo04g01621 Cmo18g01077 . Cma18g01055 Car04g01600 Car18g00979 Sed02g1420 Cpe09g00260 Cpe01g01377 Bhi07g01386 Tan04g0919 Cmetu10g1688 Lac13g0442 Hepe10g1855 . . Cla05g02345 . . Cco05g2586 Clacu05g2513 . Cre05g2491 Cone13ag0869 Cone19ag0870 Cone6ag0482 Cone9ag0494 Lsi04g00305 Csa05g02563 Chy10g01103 Cme10g00307 . Blo11g00822 Bda07g01518 . Bpe11g01680 . . . . . . . . . Car15g00855 . . . . . . . . . . . . . . . . . . Chy09g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004322 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01621 Cmo_Chr04 FPKM 9.56962 11.467788 11.815289 10.367857 11.457043 9.389773 13.870832 10.343191 11.141598 10.557673