Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01623 ATGAGCAGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCTTGCGGGAAAGCTTCTTTAAAGGACGATCATTCGCAACTTGGGGGACCTGGGTTCTCTCGTGTTGTTTTCTGTAATGAACCAAAGTGTTTTGAGGCAGAAATTCGTAGCTACATAGACAATTATGTTAGTACCACCAAGTATACTTTAGCTACTTTCCTGCCTAAGTCATTGTTTGAGCAATTCAGGAGAGTGGCCAATTTCTACTTTTTAGTCACTGGGATCCTTGCTTTTACTCCCCTTGCTCCTTACACCGCTGTCAGTGCCATCGTCCCTCTTATTCTCGTCATCTCGGCGACGATGATCAAAGAAGGGATCGAGGATCGGAGGCGCAAAAAACAGGATCTTGAGGTAAACAATAGAAAGGTAAAAGTCCACCATGGAGATGGAGTTTTTGGTTATACAGAGTGGAAGAATCTGATGGTTGGTGATATTGTGAAAGTAGAGAAGGATGGATTCTTTCCAGCTGATATTGTCTTGCTTTCATCAAGTTATGAGGACGCAATCTGCTACGTTGAGACGATGAATCTCGACGGCGAGACGAATTTGAAACTAAAACAAGCGTTGGAGGAAACGTCGCATATGAACGAAGATTTTATGTTCAATAGCTTTAAGGCTATCCTAAAATGTGAGGATCCAAATGCTAATTTATACAGTTTTGTTGGTAGTTTAGAGCTGGAAGAACAACAATATCCTCTGTCTCCTCAACAGCTACTCCTTCGAGGCTCTAAGCTTCGGAATACGGATTATATATACGGGGTTGTTGTCTTTACGGGCCGTGACACGAAGGTTATTCAAAATTCTACTGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAAATGGATAAGATTATATATTTTTTGTTCTGTCTTCTGTTTTTGCTTGCTCTTGTAGGATCTGTAGTTTTTGGCGTTGTGACTGAGGATGATTTGGAGAATGGGAGAATGAAACGATGGTATCTGAGGCCTGATGATGCTAGAGTTTTCTATGATCCAAAAAGGGCTCAAATGGCTGCAATTTTCCATTTCCTTACAGCACTGATGTTATATAACTACTTCATTCCAATATCACTGTATGTATCAATAGAAATTGTGAAAGTTCTTCAGAGCATGTTCATCAATCAAGATATTAATATGTATTATGAAGAAGCGAATAAACCAGCTCGTGCTCGCACCTCGAATTTGAATGAAGAACTCGGTCAAGTCGATACGATACTCACTGACAAGACGGGAACTTTGACATGTAATTCAATGGAGTTCATCAAGTGTTCTGTGGCAGGGAGGGCTTATGGTCAGGCAAATGAGGGGAAGCACCATGAGGATGTCAAGAATCAACCTTCACATATCAAAGGTTTTAACTTTAAGGATGATAGGATTATGAATGGGAATTGGGTTAATGAGCCTCATGCCAATGTCATCAAAACTTTTCTTCGTGTTCTTGCGACTTGTCATACGGCGATTCCCGAAATCAATGAGGACAATGGAGAGGTTTCTTATGAGGCCGAATCTCCAGACGAAGCAGCATTTGTGATCGCTGCTAGAGAACTCGGATTCGAGTTCTACAAAAGAACACAGACAAGTATATCACTGCATGAGTTTGATCCTTCATTGGGCAAGAAAGTTGATAGGGCATATAAACTGCTGCATGTTTTGGAGTTCAACAGCTCAAGAAAGCGGATGTCTGTCATAGTAAGAAATGAAGAGGCCAAGACATTGTTATTCTGTAAAGGTGCAGACAGTGTTATGTTTGAAAGGCTTGGAAAGAATGGGAGGGTGTTTGAGGAGGAGACCAAGGAACATGTCAGTGAGTATGCTGATGCAGGATTGAGGACTTTGATACTCGCCTATCGCGAGCTCGACGACGAAGAATACAGAGAGTTTGATAGCAAGTTCACTATGGCGAAAAACTCGGTTAGTGCAGACCGAGAAATGTTGATTAATCAAGTGACCGATAAAATCGAAAGGAATTTGATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGATAGGCTTGCTCAAGCTGGAATAAAGATTTGGGTATTGACTGGGGACAAAATGGAGACTGCTATCAATATTGGTTTTTCCTGTAGATTACTGAGACAAGATACGAAGCAGATTGTAATTACTCTCGAGACGTCGGAAATTCAGGCGTTAGAGAAGACGGCGGATAAGGCATCGATCATCAAGGCATCGAGGCAAAGCGTCCTCGATCAAATTACTCGAGGGAGAGCTCAGATCGCATCACCAAGTGGGATATCTGAAGCATTTGCATTAATCATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACACCATGAAGGCATTGTTTCTCGAGGTAGCAATACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACGAGGTTAGTTAAATGTGGAACACAGAAAACAACTTTAGCTATCGGCGACGGTGCCAACGACGTCGGAATGCTTCAAGAAGCAGACATTGGAGTTGGAATTAGCGGTGTTGAAGGAATGCAGGCCGTTATGTCGAGCGACGTTGCGATAGCACAGTTCAAATATCTAGAGCACCTGCTTCTTGTTCATGGACATTGGTGCTATAGAAGGATATCATCAATGATTTGCTACTTTTTCTACAAGAACATTACTTTTGGTTTTACAATATTCTTATACGAAGCATTCACATCATTCTCTGGGCAGCCTGCGTATAATGATTGGTTTCTATCGCTTTACAATGTGTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGCGTTTTTGATCAGGATGTTTCTGCAAGACTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTATTCAGCTGGGCCCGAATTCTCAGTTGGATGTTTAATGGACTGTGCAGTGCTGTGATCATTTTCTCCCTATGCACTCGAGCGCTCGAGTATCAGGCGTTCAACTCCGACGGGAGAACTGCAGGGCGGGATATTCTGGGTGCAACGATGTACTCTTGTGTTGTTTGGGTCGTGAACTTGCAAATGGCGCTTGCTGTTAGTTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCGGTTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCCACGTTTTCAACCAATGGTTACAAGATCTTCATTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTCTATTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCGGCTATACAGATGAGGTTCCTTCCTATGTATCATCAAATGATTTTGTGGATTAGGAATGAAGGGCAGCTGGAAAACCAAGAGTACCGTGATCTTTTGAGGTCAATAGCTCCCGATCAACGAGCATGGGTTCCACCGCACGGTTAG 3480 42.87 MSSGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPKCFEAEIRSYIDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVTGILAFTPLAPYTAVSAIVPLILVISATMIKEGIEDRRRKKQDLEVNNRKVKVHHGDGVFGYTEWKNLMVGDIVKVEKDGFFPADIVLLSSSYEDAICYVETMNLDGETNLKLKQALEETSHMNEDFMFNSFKAILKCEDPNANLYSFVGSLELEEQQYPLSPQQLLLRGSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYFLFCLLFLLALVGSVVFGVVTEDDLENGRMKRWYLRPDDARVFYDPKRAQMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSMFINQDINMYYEEANKPARARTSNLNEELGQVDTILTDKTGTLTCNSMEFIKCSVAGRAYGQANEGKHHEDVKNQPSHIKGFNFKDDRIMNGNWVNEPHANVIKTFLRVLATCHTAIPEINEDNGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRAYKLLHVLEFNSSRKRMSVIVRNEEAKTLLFCKGADSVMFERLGKNGRVFEEETKEHVSEYADAGLRTLILAYRELDDEEYREFDSKFTMAKNSVSADREMLINQVTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFSCRLLRQDTKQIVITLETSEIQALEKTADKASIIKASRQSVLDQITRGRAQIASPSGISEAFALIIDGKSLSYALEDTMKALFLEVAIHCASVICCRSSPKQKALVTRLVKCGTQKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWARILSWMFNGLCSAVIIFSLCTRALEYQAFNSDGRTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSVSIWYIFLLIYGSMTPTFSTNGYKIFIEVLAPGPSYWLVLLFVVISTLIPYFSYSAIQMRFLPMYHQMILWIRNEGQLENQEYRDLLRSIAPDQRAWVPPHG 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8287111 8292653 + CmoCh04G016230.1 Cmo04g01623 380598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01623 1159 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 679 IPR023299 GO:0000166
Cmo04g01623 1159 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1148 - -
Cmo04g01623 1159 SUPERFAMILY Calcium ATPase, transduction domain A 141 283 IPR008250 -
Cmo04g01623 1159 CDD P-type_ATPase_APLT_Dnf-like 57 999 - -
Cmo04g01623 1159 Pfam Cation transport ATPase (P-type) 500 605 - -
Cmo04g01623 1159 Gene3D - 524 655 IPR023299 GO:0000166
Cmo04g01623 1159 Pfam E1-E2 ATPase 137 376 - -
Cmo04g01623 1159 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1120 IPR023298 -
Cmo04g01623 1159 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Cmo04g01623 1159 SFLD p-type atpase 408 893 IPR044492 -
Cmo04g01623 1159 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cmo04g01623 1159 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Cmo04g01623 1159 SUPERFAMILY HAD-like 419 897 IPR036412 -
Cmo04g01623 1159 Pfam Phospholipid-translocating P-type ATPase C-terminal 870 1120 IPR032630 -
Cmo04g01623 1159 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1126 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo04g01623 1159 Gene3D - 114 286 - -
Cmo04g01623 1159 Gene3D - 674 882 IPR023214 -
Cmo04g01623 1159 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 807 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g01623 1159 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 358 493 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g01623 1159 SFLD Haloacid Dehalogenase 408 893 - -
Cmo04g01623 1159 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cmo04g01623 1159 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1148 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01623 Cmo18g01081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01623 Cmo-Chr4:8287111 Cmo15g01500 Cmo-Chr15:10177017 0 dispersed
Cmo18g01081 Cmo-Chr18:11365450 Cmo04g01623 Cmo-Chr4:8287111 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01623 K01530 - csv:101207148 2041.93