Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01626 ATGGCGGCTGTATCACCGGCGCCTAATTCAACTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCCGCCGCAACAATCGCCTCCTCCGAATCCTTCTGACCCAGCAACCCCCACTTCGTCTCCTCCTCCTCCGCCGCCTGGGACCGTTCCGCCGGAAACTCCATCAGCTCCGCCGCCATCAGCACCGGACCCTCCACCATCAGCAACTCCCCCAGTTAGCTCCATTCCTCCAACGCCATCTAATCCCCCACCAAGTTTATCTCCACCTCCTCAAACCCCTCCTCCACAACCATCAAAACCACCTGAAAATTCACCGCCGGTGCCACCACCACCACCACCACAAGCTAAACCGCCGGTTAATCCATCACCGCCGCCACAGCCCACAAACCCACCTGAGAAGTCACCTCCTATGCCACCATCAACACCTCCAGTAACGTCACCTCCTTCCCCAGCATCAATACCTCCTACAAACTCACCTCCTCCTCCCGTTGAACCCTCACCTTCAAGTCCTCCTCCCAAGTCATCACCGTCCCCATCTCCCCCACCACCGCCGTTGCGTCTTTCTCCTCCATCACCGTCTAAACCCCCAACATTGCCATCAGGAAATCGCACGGACGATGGTTCTGGTCTTAATGACAGAGTTAACTCGAATTCCAACAGCAATGGAGGAATCAATACAGGGGGTGTGGTCGCAATTGGCGTAGTGGCTGGAATTATAATGCTTTCCATAATTGGGTTTGCAGTATGGTACATGAGGAAGCCAAGGAAAAATGATTCCGGGCATGGGGGCATTATGCCATCCTCTCTCAGCTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCACAGTTCATCAAAACATCCATGCCAGTGGCAGTGGCAGTGGCAGTGGCGGTGGCGGTGGCAGTGGTGGAATATACACTCCAAGAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATATGAAGAACTCTTCAAAGCAACAAATGCCTTTTCTGCGCAGAACCTTTTGGGAGAAGGCGGCTTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTGAAGATTGGTGGTGGGCAGGGCGAGCAGGAATTCAAAGCTGAAGTTGAGATTATTGGCCGTGTTCACCACCGCCACTTGGTTTCTCTTGTGGGCTATTGCATTTCAGAGCATCAAAGGTTGCTTGTCTATGATTATGTGCCTAATAATTCCCTCTACTACCATCTTCATCTTGAAGGGGATGGTGAGCTCGTTCTAGAATGGGCAAAACGCTATAAAATAGCAGCTGGTGCAGCACGGGGAATTGCATATCTTCATGAAGACTGCCATCCTCGAATCATCCACCGTGATATCAAATCTTCGAACATTCTTCTAGACGAAAATTTTGAAGCTCGGGTTTCAGACTTTGGGCTTGCTAAGTTAGCTCTGGATGAACAAACTCATATAACTACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGCGATCAGATGTCTATTCTTTCGGAGTTGTACTTCTCGAGCTGATTACGGGTCGGAAGGCTGTGGACACGTCCCAACCAATGGGGGATGAGAGCCTTGTTGAATGGGCTCGGCCTTTACTAAACCACGCACTCAACAACAGCCAAGACTTCAAAAACTTGGTGGATCCTAGGCTTGAAAGGAACTATATAGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCATGCATCTGCCAAGAGACCACACATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGGCACTGCAGATTTAAGCAATGGAATGAGATTTGGGGAGAGTCAAGCTTTCGACTCAGGTCAACAATCTGCCGAGCTTAGATTTTTCCGAATGCTGGCGTTCGGTAACCAAGATTACAGTTCAGAATTTTATAGCCAAGGAAGGCTTTTTTCCATGCCTACTGGAACTCAGGTTGATACCAAGAGCACCTTCTTGATGTTCATGTAA 2052 49.9 MAAVSPAPNSTPSPASPSTPSPPQQSPPPNPSDPATPTSSPPPPPPGTVPPETPSAPPPSAPDPPPSATPPVSSIPPTPSNPPPSLSPPPQTPPPQPSKPPENSPPVPPPPPPQAKPPVNPSPPPQPTNPPEKSPPMPPSTPPVTSPPSPASIPPTNSPPPPVEPSPSSPPPKSSPSPSPPPPPLRLSPPSPSKPPTLPSGNRTDDGSGLNDRVNSNSNSNGGINTGGVVAIGVVAGIIMLSIIGFAVWYMRKPRKNDSGHGGIMPSSLSSSPKSESSLMKVHSTVHQNIHASGSGSGSGGGGGSGGIYTPRELGGLGSSRPLFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLEGDGELVLEWAKRYKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDTSQPMGDESLVEWARPLLNHALNNSQDFKNLVDPRLERNYIESEMLRMIGIAAACVRHASAKRPHMGQVVRAFDSLGTADLSNGMRFGESQAFDSGQQSAELRFFRMLAFGNQDYSSEFYSQGRLFSMPTGTQVDTKSTFLMFM 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8295235 8299378 - CmoCh04G016260.1 Cmo04g01626 380601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01626 683 MobiDBLite consensus disorder prediction 257 283 - -
Cmo04g01626 683 MobiDBLite consensus disorder prediction 10 197 - -
Cmo04g01626 683 Gene3D Transferase(Phosphotransferase) domain 1 412 626 - -
Cmo04g01626 683 PRINTS Proline rich extensin signature 16 32 - -
Cmo04g01626 683 PRINTS Proline rich extensin signature 1 12 - -
Cmo04g01626 683 PRINTS Proline rich extensin signature 54 79 - -
Cmo04g01626 683 PRINTS Proline rich extensin signature 33 50 - -
Cmo04g01626 683 SUPERFAMILY Protein kinase-like (PK-like) 318 610 IPR011009 -
Cmo04g01626 683 SMART serkin_6 336 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01626 683 PANTHER BNACNNG34790D PROTEIN 51 662 - -
Cmo04g01626 683 MobiDBLite consensus disorder prediction 198 226 - -
Cmo04g01626 683 MobiDBLite consensus disorder prediction 1 226 - -
Cmo04g01626 683 ProSiteProfiles Protein kinase domain profile. 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01626 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Cmo04g01626 683 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 51 662 - -
Cmo04g01626 683 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Cmo04g01626 683 Gene3D Phosphorylase Kinase; domain 1 315 411 - -
Cmo04g01626 683 Pfam Protein kinase domain 338 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01626 683 MobiDBLite consensus disorder prediction 263 283 - -
Cmo04g01626 683 CDD STKc_IRAK 342 615 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01626 Cmo15g01052 CCT
Cmo04g01626 Cmo18g01082 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01626 Cmo-Chr4:8295235 Cmo15g00209 Cmo-Chr15:1017698 4.44E-180 dispersed
Cmo18g01082 Cmo-Chr18:11371917 Cmo04g01626 Cmo-Chr4:8295235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74280 PF00069 Pkinase 4.50E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01626 - - csv:101215813 790.801