Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01626 | ATGGCGGCTGTATCACCGGCGCCTAATTCAACTCCGTCGCCGGCTTCTCCCTCCACTCCATCTCCGCCGCAACAATCGCCTCCTCCGAATCCTTCTGACCCAGCAACCCCCACTTCGTCTCCTCCTCCTCCGCCGCCTGGGACCGTTCCGCCGGAAACTCCATCAGCTCCGCCGCCATCAGCACCGGACCCTCCACCATCAGCAACTCCCCCAGTTAGCTCCATTCCTCCAACGCCATCTAATCCCCCACCAAGTTTATCTCCACCTCCTCAAACCCCTCCTCCACAACCATCAAAACCACCTGAAAATTCACCGCCGGTGCCACCACCACCACCACCACAAGCTAAACCGCCGGTTAATCCATCACCGCCGCCACAGCCCACAAACCCACCTGAGAAGTCACCTCCTATGCCACCATCAACACCTCCAGTAACGTCACCTCCTTCCCCAGCATCAATACCTCCTACAAACTCACCTCCTCCTCCCGTTGAACCCTCACCTTCAAGTCCTCCTCCCAAGTCATCACCGTCCCCATCTCCCCCACCACCGCCGTTGCGTCTTTCTCCTCCATCACCGTCTAAACCCCCAACATTGCCATCAGGAAATCGCACGGACGATGGTTCTGGTCTTAATGACAGAGTTAACTCGAATTCCAACAGCAATGGAGGAATCAATACAGGGGGTGTGGTCGCAATTGGCGTAGTGGCTGGAATTATAATGCTTTCCATAATTGGGTTTGCAGTATGGTACATGAGGAAGCCAAGGAAAAATGATTCCGGGCATGGGGGCATTATGCCATCCTCTCTCAGCTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCACAGTTCATCAAAACATCCATGCCAGTGGCAGTGGCAGTGGCAGTGGCGGTGGCGGTGGCAGTGGTGGAATATACACTCCAAGAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATATGAAGAACTCTTCAAAGCAACAAATGCCTTTTCTGCGCAGAACCTTTTGGGAGAAGGCGGCTTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTGAAGATTGGTGGTGGGCAGGGCGAGCAGGAATTCAAAGCTGAAGTTGAGATTATTGGCCGTGTTCACCACCGCCACTTGGTTTCTCTTGTGGGCTATTGCATTTCAGAGCATCAAAGGTTGCTTGTCTATGATTATGTGCCTAATAATTCCCTCTACTACCATCTTCATCTTGAAGGGGATGGTGAGCTCGTTCTAGAATGGGCAAAACGCTATAAAATAGCAGCTGGTGCAGCACGGGGAATTGCATATCTTCATGAAGACTGCCATCCTCGAATCATCCACCGTGATATCAAATCTTCGAACATTCTTCTAGACGAAAATTTTGAAGCTCGGGTTTCAGACTTTGGGCTTGCTAAGTTAGCTCTGGATGAACAAACTCATATAACTACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGCGATCAGATGTCTATTCTTTCGGAGTTGTACTTCTCGAGCTGATTACGGGTCGGAAGGCTGTGGACACGTCCCAACCAATGGGGGATGAGAGCCTTGTTGAATGGGCTCGGCCTTTACTAAACCACGCACTCAACAACAGCCAAGACTTCAAAAACTTGGTGGATCCTAGGCTTGAAAGGAACTATATAGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCATGCATCTGCCAAGAGACCACACATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGGCACTGCAGATTTAAGCAATGGAATGAGATTTGGGGAGAGTCAAGCTTTCGACTCAGGTCAACAATCTGCCGAGCTTAGATTTTTCCGAATGCTGGCGTTCGGTAACCAAGATTACAGTTCAGAATTTTATAGCCAAGGAAGGCTTTTTTCCATGCCTACTGGAACTCAGGTTGATACCAAGAGCACCTTCTTGATGTTCATGTAA | 2052 | 49.9 | MAAVSPAPNSTPSPASPSTPSPPQQSPPPNPSDPATPTSSPPPPPPGTVPPETPSAPPPSAPDPPPSATPPVSSIPPTPSNPPPSLSPPPQTPPPQPSKPPENSPPVPPPPPPQAKPPVNPSPPPQPTNPPEKSPPMPPSTPPVTSPPSPASIPPTNSPPPPVEPSPSSPPPKSSPSPSPPPPPLRLSPPSPSKPPTLPSGNRTDDGSGLNDRVNSNSNSNGGINTGGVVAIGVVAGIIMLSIIGFAVWYMRKPRKNDSGHGGIMPSSLSSSPKSESSLMKVHSTVHQNIHASGSGSGSGGGGGSGGIYTPRELGGLGSSRPLFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLEGDGELVLEWAKRYKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDTSQPMGDESLVEWARPLLNHALNNSQDFKNLVDPRLERNYIESEMLRMIGIAAACVRHASAKRPHMGQVVRAFDSLGTADLSNGMRFGESQAFDSGQQSAELRFFRMLAFGNQDYSSEFYSQGRLFSMPTGTQVDTKSTFLMFM | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8295235 | 8299378 | - | CmoCh04G016260.1 | Cmo04g01626 | 380601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01626 | 683 | MobiDBLite | consensus disorder prediction | 257 | 283 | - | - | |
Cmo04g01626 | 683 | MobiDBLite | consensus disorder prediction | 10 | 197 | - | - | |
Cmo04g01626 | 683 | Gene3D | Transferase(Phosphotransferase) domain 1 | 412 | 626 | - | - | |
Cmo04g01626 | 683 | PRINTS | Proline rich extensin signature | 16 | 32 | - | - | |
Cmo04g01626 | 683 | PRINTS | Proline rich extensin signature | 1 | 12 | - | - | |
Cmo04g01626 | 683 | PRINTS | Proline rich extensin signature | 54 | 79 | - | - | |
Cmo04g01626 | 683 | PRINTS | Proline rich extensin signature | 33 | 50 | - | - | |
Cmo04g01626 | 683 | SUPERFAMILY | Protein kinase-like (PK-like) | 318 | 610 | IPR011009 | - | |
Cmo04g01626 | 683 | SMART | serkin_6 | 336 | 585 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01626 | 683 | PANTHER | BNACNNG34790D PROTEIN | 51 | 662 | - | - | |
Cmo04g01626 | 683 | MobiDBLite | consensus disorder prediction | 198 | 226 | - | - | |
Cmo04g01626 | 683 | MobiDBLite | consensus disorder prediction | 1 | 226 | - | - | |
Cmo04g01626 | 683 | ProSiteProfiles | Protein kinase domain profile. | 336 | 615 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01626 | 683 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 458 | 470 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g01626 | 683 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 51 | 662 | - | - | |
Cmo04g01626 | 683 | ProSitePatterns | Protein kinases ATP-binding region signature. | 342 | 364 | IPR017441 | GO:0005524 | |
Cmo04g01626 | 683 | Gene3D | Phosphorylase Kinase; domain 1 | 315 | 411 | - | - | |
Cmo04g01626 | 683 | Pfam | Protein kinase domain | 338 | 606 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01626 | 683 | MobiDBLite | consensus disorder prediction | 263 | 283 | - | - | |
Cmo04g01626 | 683 | CDD | STKc_IRAK | 342 | 615 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01626 | Cmo15g01052 | CCT | |
Cmo04g01626 | Cmo18g01082 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01626 | Cmo-Chr4:8295235 | Cmo15g00209 | Cmo-Chr15:1017698 | 4.44E-180 | dispersed | |
Cmo18g01082 | Cmo-Chr18:11371917 | Cmo04g01626 | Cmo-Chr4:8295235 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74280 | PF00069 | Pkinase | 4.50E-44 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01626 | - | - | csv:101215813 | 790.801 |