Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01627 ATGGCGAATGTGATTGATCAGGATCAACAGTGGCTTATCAATGCCTTGTCGGCCACCCTCGACCCCAACCACGAAGTTCGATCATTTGCTGAAGCCTCGCTAAATCAAGCATCTCTTCAACCAGGTTTTGGAGTTGCATTATCCAAAGTTGCGGCCAACAGGGAGCTTCCTGTAGGATTGCGCCAGCTAGCTGCAGTCCTGTTAAAGCAGTTCATCAAGAAACACTGGCAGGAGGGCGATGAATTATTTGAGCATCCTGCCGTTTCTAATGATGAGAAGGCAGCCATTCGTCAGCTTCTTTTATTAACGTTGGATGATTCCCATAGAAAAATCTGTACAGCAATTAGTATGGCTGTGGCATCAATCGCAATATATGATTGGCCAGAGGAATGGCCCGAGCTATTGCCTTGCCTCTTGAATTTGATGAATAATCGAATAAATGTGAATGGTGTGCATGGAGGTCTAAGGTGCTTGGCTCTACTTTCTGGGGAATTGGATTGTGAAATGATTCCAAGACTTATACCTTCTCTGTTCCCACACTTGCTTTCAATTGTTTCATCTACAGAGATTTATGACAAGTATTTGCGTACGAAGGCCCTGTCAGTTGTTTATTCTTGTATATCCATGTTAGGGGCGATGAGTGGTGTGTATAAGGAAGAAACCAGAGCGTTGGTAATACCCATGCTAAAACCATGGATGGAACAGTTCTCTAGCATATTAGGTCATCCTGTGCAATCTGAAGACCCCGATGACTGGAGCATTAGAATGGAGGTCTTAAAGTGCATGAACCAGTTCTTTCAGAATTTCCCTAGTTTTGCAGAAAGTGATATTACAATTATTTTGCAATCAGTGTGGCAGACATTTGTGTCATCTCTAGAGATATATGTACGATCATCCATTGAAGGTGTAGAAGATCCATATGAAGGAAGCTACGATTCCGATGGTGCTGACAAAAGTCTTGATTCTTTTGTCATCCAGTTGTTCGAATTTCTTTTAACAATAGTTGGAAGTTCAAAACTGGTGAAGCTTGTGAAGAACAATTTAGGGGAGCTGGTTTATTACACAATTGCTTTTCTACAAATTACGGAGCAACAGTTTCATATGTGGTCAGTGGATGCCAATCAATTTGTTGCCGATGAGGATGATGGCACCTTTAGCTGTCGTGTTTCAGGTGCACTGTTACTTGAAGAAATTGTTGCCAGTTGTGGTCTTGATGGTATCAATGCCATAATAGATGCTGCCAAAAGTCGGTTCAGTGAGTCAAAAAGAGAAAAAGCTTCTGGTTCTTCAGTTTGGTGGAGAATCAGGGAGGCTGTTCTATTCGCTTTAGCTTCTTTGTCAGAGCAGTTGATTGAAGTAGAGGCTCCTGGAGTGACAAGAGTTGGTTTAGAAAGTTTTTTGGAGGAAGTATTAACTGAAGACATGTCTATCAGTCCTAGTGATTGTCCTTTTCTTTATGCTCGTTTATTCACGTCAGTTGCCAAGCTCTCCTCTATGATTAGGCGTGACCTTATTCATCAGTTCCTTCATGAAGCTGTGAAGGCTCTTGGCATGGATGTACCACCTCCCGTGAAAGTTGGCGCCTGTAGGGCACTTTCTGAGCTCCTACCTGAAGCAAACAAAGAAATCATTGGGTCTGAAATGATGTTTTTGTTTTCATCACTTGGAAATCTTCTCAATGGGGCGTCAGATGATACCTTGCACTTGGTACTTGACACCCTTCAAGCTGCAGTTAAGGCCGGTGGTGAATTGTCCGCTTCAATAGAGCCCATTCTCTCTCCTGTGATTCTTGAAATGTGGGCATCGCATGTCTCTGATCCTTTTATCAGCATTGATATAATCGAGGTTCTCGAGGCAATAAAAAATTCTCCTGGTTGTGTTCACTCGTTAGCTTCACGAATTTTACCATATTTAGTGCCTATACTAGACAAACCCCACCAGCAACCAGATGGTTTAGTACCTGGATCGTTAGATCTGTTGGCAATGCTATTGAAGAATGCTCCAATAGATGTTGTGAAAGCAGCGTATGATGCTTGTTTTGATGGTGTTGTCAGGATAGTCCTTCAAACTGATGATCATAGTGAATTGCAGACTGCTACAGAATCTCTAGCAGCTTTTGTAGCTGGGGGAAAGCAAGAAATTCTTACTTGGGGTTCTGGATTTACAATGAAAAGTTTGCTTGCGGCAGCTTCGAGGTTATTAGATCCTAAGATGGAAAGTTCTGGATCTTTTTTGGTTGGAAGTTTTATCCTGCAATTGATATTGCATCTTCCATCGCAAATGGCCCAACATCTTCCTGATCTGGTTGCTGCACTGGTTAGGCGAATGCAATCTGTTCAAATTGCAGGAGTGCGAGGCTCGTTGATACTTATTTTTGCTCGATTGGTTCACATGAGTGCCCCTAATATTCAACAGCTTATCGATTTGCTAGTTTCAATACCTGCTGAAGGCCATGATAATGCATTTGTTTATTTGATGTCAGAATGGACGAAGTTGCAAGGGGAGATTCAGGGTGCTTATCAAATAAAAGTCACCACTAGTGCATTGGCACTGTTGCTGTCAATACAAAATCCTCACTTAGTACAAATGAGTGTTCAAGTACAACTTACTAAGGTTTCTGCAGGGATAACCACTCGATCAAAAGGAAAATTAGCTCTGGATCAGTGGACAGTGATTCCACTTCCAGTGAAGGATGTGATTCATATGGTCCTTGACAAAATACCCTTGTCACTGTGGGGATTCGAATTTGTGGTCTTCTGCACAGCCGGTGCTCCTCCTGGCATAGATGGTTGGATATCAATCTATATATTTTCTTTATTGGCTGATGCACTAATTGAAATCCGTGAACAAGTATTGGTTGATGATCAGGATAGCGAATGGGAGGATGCTGAGGCAGATGGTGTTTCAAGTGACGAAAACCTGCTTCTTGTCAATGCTGCATCACTCGGCAGACATACCCATGATTATCTTCAAGAGATGGCAAAAGTATACGATGAGGTATGTTCAAAACATAATGAGTTTGATCTTTCCAGGATTTTCTTAATGTGTACTTCTGGTTTGGAAGGTGATGAGTATGAAGATGACCTGCTTACTGTATCTGATCCTCTTAATCAGATTAATTTGGCAAAATATCTGGTGGACTTTTTTATGAACTTGTATCAGAATGACAGACAGAACTTTGATAATCTCTTCAAGAGTCTGTCCCAGCCTCAACAGAATGCTATCCAAATGGTACTAAGTCGCTGA 3246 41.9 MANVIDQDQQWLINALSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGLRQLAAVLLKQFIKKHWQEGDELFEHPAVSNDEKAAIRQLLLLTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPCLLNLMNNRINVNGVHGGLRCLALLSGELDCEMIPRLIPSLFPHLLSIVSSTEIYDKYLRTKALSVVYSCISMLGAMSGVYKEETRALVIPMLKPWMEQFSSILGHPVQSEDPDDWSIRMEVLKCMNQFFQNFPSFAESDITIILQSVWQTFVSSLEIYVRSSIEGVEDPYEGSYDSDGADKSLDSFVIQLFEFLLTIVGSSKLVKLVKNNLGELVYYTIAFLQITEQQFHMWSVDANQFVADEDDGTFSCRVSGALLLEEIVASCGLDGINAIIDAAKSRFSESKREKASGSSVWWRIREAVLFALASLSEQLIEVEAPGVTRVGLESFLEEVLTEDMSISPSDCPFLYARLFTSVAKLSSMIRRDLIHQFLHEAVKALGMDVPPPVKVGACRALSELLPEANKEIIGSEMMFLFSSLGNLLNGASDDTLHLVLDTLQAAVKAGGELSASIEPILSPVILEMWASHVSDPFISIDIIEVLEAIKNSPGCVHSLASRILPYLVPILDKPHQQPDGLVPGSLDLLAMLLKNAPIDVVKAAYDACFDGVVRIVLQTDDHSELQTATESLAAFVAGGKQEILTWGSGFTMKSLLAAASRLLDPKMESSGSFLVGSFILQLILHLPSQMAQHLPDLVAALVRRMQSVQIAGVRGSLILIFARLVHMSAPNIQQLIDLLVSIPAEGHDNAFVYLMSEWTKLQGEIQGAYQIKVTTSALALLLSIQNPHLVQMSVQVQLTKVSAGITTRSKGKLALDQWTVIPLPVKDVIHMVLDKIPLSLWGFEFVVFCTAGAPPGIDGWISIYIFSLLADALIEIREQVLVDDQDSEWEDAEADGVSSDENLLLVNAASLGRHTHDYLQEMAKVYDEVCSKHNEFDLSRIFLMCTSGLEGDEYEDDLLTVSDPLNQINLAKYLVDFFMNLYQNDRQNFDNLFKSLSQPQQNAIQMVLSR 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8301773 8325191 - CmoCh04G016270.1 Cmo04g01627 380602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01627 1081 ProSiteProfiles Importin-beta N-terminal domain profile. 30 106 IPR001494 GO:0006886|GO:0031267
Cmo04g01627 1081 Pfam Importin-beta N-terminal domain 30 105 IPR001494 GO:0006886|GO:0031267
Cmo04g01627 1081 PANTHER IMPORTIN-9 6 1079 - -
Cmo04g01627 1081 PANTHER IMPORTIN-7, 8, 11 6 1079 - -
Cmo04g01627 1081 SUPERFAMILY ARM repeat 8 1079 IPR016024 -
Cmo04g01627 1081 Gene3D - 7 1080 IPR011989 -
Cmo04g01627 1081 SMART IBN_N_2 30 106 IPR001494 GO:0006886|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01627 K20224 IPO9, RANBP9; importin-9 - csv:101216055 1780.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01627 Cmo18g01084 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01627 Cmo-Chr4:8301773 Cmo08g00101 Cmo-Chr8:526371 7.72E-18 dispersed
Cmo01g00383 Cmo-Chr1:1866847 Cmo04g01627 Cmo-Chr4:8301773 8.60E-10 transposed
Cmo18g01084 Cmo-Chr18:11381468 Cmo04g01627 Cmo-Chr4:8301773 3.85E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g207 . . . . . . Bma14g01684 . Cmo04g01627 Cmo18g01084 . . Car04g01606 . Sed07g1969 . Cpe01g01382 Bhi07g01398 Tan04g0927 Cmetu10g0461 Lac13g0436 Hepe10g1849 . . Cla05g02354 Cam05g2523 Cec05g2551 Cco05g2591 Clacu05g2518 Cmu05g2380 Cre05g2495 . . . . Lsi04g00312 Csa05g02557 Chy10g01097 Cme10g00314 . Blo11g00817 Bda07g01513 . Bpe11g01676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011083 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01627 Cmo_Chr04 FPKM 14.129898 16.989233 4.66401 5.108914 5.927131 7.587101 5.908096 0.205473 0.0 0.092539