Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01632 ATGGCTCAAGATCATTCTAGTTGTGAATCTCATCAGAAACGAGCTGGTCTATTAAAAGACCAAGTGAGGTTGTTTAAGAGGAAGGATTCTGACCGCTATGAAATAGTTTCAATTCAAGATCCTTTGTCGTTTGAGAAAGGGTTCTTCATAGTTATTCGTGCCAGTCAGCTTCTAGCTCAGAAGAATGATGGAATAATATTGGTTGGTTTAGCTGGTCCTTCTGGGGCTGGAAAAACTGTGTTTACAGAAAAGATTATGACCTTTATGCCTAGGAAGCAAGTCCAGGTCCCAATTTATGATTTCAAATCCAGTTCCAGAGTTGGATACAGGACCATTGAGGCTCCCAGCTCAAGGATTGTGATCATTGAAGGAATTTATGCTTTAAGTGAAAGGTTGAGGCCCCTATTGGACCTTAGAGTATCTGTTAGAGGTGGAGTTCACTTCGACCTTGTGAAGAGGGTGTTACGTGACATCCAACGTGCTGGCCAAGAACCAGAAGAAATTATTCATCAAATCTCTGAAACAGTGTATCCAATGTACAAGGCTTTCATCGAACCAGATCTTGAAACTGCTCATATAAAAATCATCAACAAATTTAATCCCTTCACAGGATTTCAAAGCCCCACATACATTTTGAAGGTTATTATTCATTTGGCCCTTAATTCAGCGAGAAAGATAAGAGAAGATCAAATTAAGGCTGTGTTATCTGAAGATCATATAGAACATAAAGAGCAGACGTATGATATATATCTGTTGCCACCAGGTGAAGATCCAGAGTCTTGTCAATCATATCTAAGGATGCGCAATAAAGAAGGAAAATACAGTCTAATGTTTGAGGAATGGGTTACTGATAATCCATTTATCATATCTCCAAGAATAACTTTTGAGGTCAGTGTGCGGCTTCTAGGAGGGCTGATGGCCTTGGGATACACAATAGCAACGATTCTTAAAAGAAGCAGCCATGTATTCTCAGATCAAACAGTGTGTGTGAAAATTGATTGGCTGGAACAATTAAACCGCCAGAATGTTCAGGTACAGGGAAAAGACCGTCTCGTCGTAAAACACGTAGCGGAGCAGCTGGGATTGGATGGTTCCTACATTCCTCGTACCTATATTGAACAGATTCAACTGGAAAAGCTTGTAAATGAAGTCATGGCTTTGCCTGATGATTTGAAGTCTAAACTCAGTCTTGACGAAGATTTGGTTTCAAGCCCCAAAGAAGCACTCTCTAGAGCCTCTGCTGATAGAGTTACCTTGAGAAATAGGAATCTCAAAAGTGGCATATCTCGGTCATATACAACCCAAAGGGAGAAAAAGATGACAGGATATGCTTCCAACCACCAGAGATTTGTTGACAGAAACTCGGAGTCTCCGGCCATGCTTGCAAACCAGGGAGCCATGACTCAGCTTTCTGAACAAATTTCATCACTAAATGACCGGATGGATGAGTTCACAACTCGAATTGAGGAGTTGAATTCAAAGTTGAGTTTCAAGAGGAATTCACCCAGCCAACAGAACATGAATCTCCAAGCAGAAACGTGTAATGGCTCTGTGCCAACTTCTTATTTCGTGTCTGGATTGGGTAATGGTTCCTTGACTGGATCCATTATGCCCAATTCTTCATCTTTCTCCCAGTTGAGCAAGGAATCTCCTTTAATGGATGAGATATCAGGAATTGCGAGGGGGCAACGACAAGTTATGCACCAACTAGATTGCCTGAGCAATCTCGTCCGGGAACGCGAAAGCGGGACCGAAAGATCTCGTCAAGTAAGAACAAAGAAGAAAACCATAATGCCTGATCCTGAGCCTCTTACGCTTCCTCTCCTGTTGACCATAGCAGTTGGTGGTGTAGGAATTTTCTTGTACAAGGGGCTCTTAAGACGTCCAATTCACAAGTTCCATCTTTCTGCTACCTACTTACAGAATACCCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCATCAGGGAATTGATTATTGAATTGGGAGACGGTGAGTGGTTTAGGGTTCATTCTTGTCTTTTTAACTGTAGTAAATTGACCCTATTGGAGCTGTATCGTTGTGAATTGGATCCACCTCCTACCTTTAAGGGATTCTTATGCTTGAAAAGCCTCAAGCTTCATCAAGTTCTGATTGCACCCGAAGACATTGAAAGTCTTATTGCTAATTGTCCACTCCTTGAGACTCTGGCGCTTTCCTACTTCGATAGTCTAGTCCTTAATATCTGTGCTCCCAATCTCAAGTACCTCTATCTTGAAGGCGAGTTTAGAGACATATGTCTCAAAAACACGCCACTTTTGGTTGCAATTTCGGTTGCATTATATATGAATGATGATACTGAGCCCTTTGGTGATAATTCTGATTGCAATTTTGAGAAGTTTTTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCATGTTTATTTCACCAAGGGCTCCTCAAACCCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTCGAACTGTACATTTGGTAAACTTAAAGTTGTGAAAACGACAGACATGTCTGGTGTACCACACGAGATGGAATTTATTAAATATTTGCTTAGGAATTGTCCGGTGCTTGAGACAATGAGTATCAGACCTTGTGTCTATGTTACAGATCGACGGTTGAATATGTTGATTGAACTGTTAAGATTTAGGAGGGCTTCACCTCATGCAGAAATTTTGTTCATCCAAGAATAG 2739 41.44 MAQDHSSCESHQKRAGLLKDQVRLFKRKDSDRYEIVSIQDPLSFEKGFFIVIRASQLLAQKNDGIILVGLAGPSGAGKTVFTEKIMTFMPRKQVQVPIYDFKSSSRVGYRTIEAPSSRIVIIEGIYALSERLRPLLDLRVSVRGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLETAHIKIINKFNPFTGFQSPTYILKVIIHLALNSARKIREDQIKAVLSEDHIEHKEQTYDIYLLPPGEDPESCQSYLRMRNKEGKYSLMFEEWVTDNPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDQTVCVKIDWLEQLNRQNVQVQGKDRLVVKHVAEQLGLDGSYIPRTYIEQIQLEKLVNEVMALPDDLKSKLSLDEDLVSSPKEALSRASADRVTLRNRNLKSGISRSYTTQREKKMTGYASNHQRFVDRNSESPAMLANQGAMTQLSEQISSLNDRMDEFTTRIEELNSKLSFKRNSPSQQNMNLQAETCNGSVPTSYFVSGLGNGSLTGSIMPNSSSFSQLSKESPLMDEISGIARGQRQVMHQLDCLSNLVRERESGTERSRQVRTKKKTIMPDPEPLTLPLLLTIAVGGVGIFLYKGLLRRPIHKFHLSATYLQNTPDLDQWMLFLSRKGIRELIIELGDGEWFRVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLIANCPLLETLALSYFDSLVLNICAPNLKYLYLEGEFRDICLKNTPLLVAISVALYMNDDTEPFGDNSDCNFEKFFGGVPYLEKLTGHVYFTKGSSNPVAASEAPDLDFWENECPSNCTFGKLKVVKTTDMSGVPHEMEFIKYLLRNCPVLETMSIRPCVYVTDRRLNMLIELLRFRRASPHAEILFIQE 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8339196 8348721 - CmoCh04G016320.1 Cmo04g01632 380607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01632 912 Gene3D - 89 206 IPR027417 -
Cmo04g01632 912 Coils Coil 467 494 - -
Cmo04g01632 912 Pfam Phosphoribulokinase / Uridine kinase family 87 195 IPR006083 GO:0005524|GO:0016301
Cmo04g01632 912 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 92 600 - -
Cmo04g01632 912 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 6 90 - -
Cmo04g01632 912 ProSiteProfiles CYTH domain profile. 211 377 IPR023577 -
Cmo04g01632 912 CDD UMPK_like 67 198 - -
Cmo04g01632 912 Pfam FBD 839 878 IPR006566 -
Cmo04g01632 912 SMART 9598neu4hmm 839 910 IPR006566 -
Cmo04g01632 912 Gene3D Ribonuclease Inhibitor 633 898 IPR032675 -
Cmo04g01632 912 Gene3D - 216 380 - -
Cmo04g01632 912 PANTHER URIDINE KINASE 92 600 - -
Cmo04g01632 912 PANTHER URIDINE KINASE 6 90 - -
Cmo04g01632 912 Pfam CYTH domain 236 371 IPR023577 -
Cmo04g01632 912 SUPERFAMILY RNI-like 656 890 - -
Cmo04g01632 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 195 IPR027417 -
Cmo04g01632 912 SUPERFAMILY CYTH-like phosphatases 229 374 IPR033469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01632 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101208611 1075.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01632 Cmo-Chr4:8339196 Cmo18g01092 Cmo-Chr18:11420299 0 dispersed
Cmo11g00243 Cmo-Chr11:1213084 Cmo04g01632 Cmo-Chr4:8339196 0 wgd
Cmo18g01091 Cmo-Chr18:11417508 Cmo04g01632 Cmo-Chr4:8339196 1.40E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1027 . . . . . . . . Cmo04g01632 . . Cma18g01071 Car04g01613 . . . Cpe01g01386 . . . . . . . Cla05g02358 Cam05g2527 Cec05g2554 Cco05g2595 Clacu05g2522 Cmu05g2384 Cre05g2499 . . . Cone9ag0506 . . . . . Blo11g00816 Bda07g01512 . Bpe11g01675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01632 Cmo_Chr04 FPKM 2.556373 3.772319 2.979699 4.311291 3.860969 3.34983 3.043877 1.868238 3.63223 3.274443