Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01633 ATGCTTCAACAACTTTTCATTTTGTTCTTCTTGTTCTTGTTTTGCTTAGGGGATTCTTCTGTAGATGCTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTGCAAGCCCTGATGGCCATCAAAGCTGCTCTGAAAGACCCTCATTCTGTTCTTAATTGGGATGAAAATGCTGTGGATCCATGTAGCTGGACCATGATCACCTGTTCTCCACAGAAACTCGTCATTACCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTACCCTGTCGCCGAGCGTCGGAAATTTGACAAATCTTCAGTCGGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTGGTCTTGCCACTCTTGATCTTTCAAGCAATGCCTTCCATGGACAAATTCCCACTTCTTTCTCCCATCTTAGGAGTCTTCAATATCTGAGGCTAAATAATAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGCTGGATCTGTCTTTTAATAATCTCAGTGGCCCATTGCCCAGATTGCTACCTAAAACCTACAACCTTGCTGGGAATTCACTCATTTGCTCGCTTGGGTCCGAGCATAGCTGCAATGGCACTGCTCCACCTCTCTTATTTCCAGTCGATACGCCTCAAACACCTTCTGGGAGATCCAAGAGCCACAGATTAGCCTTGGCTTTTGGCTCAAGCCTCGGATGCGTTGTTCTGCTGACTGTTGGGTTAGGCTGCTTTATTTGGTGGAAGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGATCAACGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCCACAAATAACTTCAGCAGTAAAAACTTGGTGGGAAAGGGTGGGTTTGGGTATGTGTACAAAGGGTACCTTCAAGATGGTGCAGTTGTAGCTGTGAAGAGGCTAAAAGATGGAAATGCTATCAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTAGCAGTGCACCGGAACCTCCTCCGTCTTTACGGGTTCTGTACGACAACCTCAGAGAGACTGTTGGTTTACCCCTATATGTCCAACGGCAGTGTCGCATCCCGTCTCAAAGCAAAACCAGCTTTGGATTGGAGCGCGAGGAAAAGAATAGCATTGGGTGCAGCAAGAGGGTTGCTGTATCTGCATGAGCAGTGTGACCCTAAGATCATACATAGGGATGTTAAGGCTGCAAATATATTGCTTGATGATTACTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGCGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGCTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTAACCAAGAAAAGAAGCTTGAAATACTAGTTGACAAGGATCTAAGGAAAACTTACGACTGGATCGAGCTTGAAGAAATGGTTCAAGTAGCTCTCTTATGTACGCAGTACCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCAGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCTTCCGGGCGATATTCTGATCTTACAGATGATTCTTCCTTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1860 45.38 MLQQLFILFFLFLFCLGDSSVDALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWTMITCSPQKLVITLGAPSQNLSGTLSPSVGNLTNLQSVLLQDNNISGTIPMELGNIPGLATLDLSSNAFHGQIPTSFSHLRSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLPKTYNLAGNSLICSLGSEHSCNGTAPPLLFPVDTPQTPSGRSKSHRLALAFGSSLGCVVLLTVGLGCFIWWKQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGYVYKGYLQDGAVVAVKRLKDGNAIRGEIQFQTEVEMISLAVHRNLLRLYGFCTTTSERLLVYPYMSNGSVASRLKAKPALDWSARKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKINQEKKLEILVDKDLRKTYDWIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSGRYSDLTDDSSLLAQAMELSGPR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8339374 8342431 + CmoCh04G016330.1 Cmo04g01633 380608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01633 619 SUPERFAMILY Protein kinase-like (PK-like) 277 569 IPR011009 -
Cmo04g01633 619 SMART serkin_6 299 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01633 619 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
Cmo04g01633 619 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Cmo04g01633 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 619 - -
Cmo04g01633 619 SUPERFAMILY L domain-like 33 194 - -
Cmo04g01633 619 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 619 - -
Cmo04g01633 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cmo04g01633 619 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Cmo04g01633 619 Gene3D Transferase(Phosphotransferase) domain 1 376 588 - -
Cmo04g01633 619 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Cmo04g01633 619 ProSiteProfiles Protein kinase domain profile. 299 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01633 619 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cmo04g01633 619 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01633 Cmo04g02293 CCT
Cmo04g02293 Cmo04g01633 ECH
Cmo04g01633 Cmo04g02293 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01633 Cmo-Chr4:8339374 Cmo04g02293 Cmo-Chr4:17046288 0 dispersed
Cmo20g00360 Cmo-Chr20:1771240 Cmo04g01633 Cmo-Chr4:8339374 4.30E-48 dispersed
Cmo04g01633 Cmo-Chr4:8339374 Cmo18g01090 Cmo-Chr18:11413289 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74281 PF00069 Pkinase 2.00E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01633 - - csv:101208127 1084.71