Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01638 ATGACGTATGTGGTAGTGACAAAAGACAATTGTATATCTGCGACAACCAGATTCAATCTCATTTTTCTTTTAATATCAGTCAAGAGTTCGTTAATATTCATTTGGCCTCTAACCTGTACTTATCTTAGTGTTTGGTTAACGATTTTAGAGTTGAAGTGCATCCACTGCCTTTCCAGTGTTTTGTTCTTTGTTCATGTTATTTTTCTTGTCTGGTGGATCCCAGACAATTTTTTTTTGGTTTATCTGATCAAAGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATGAAATTCCCGCCAGAATGGTGCTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCGCCTTGTGGCCCTGTTCACATAAATTGTCCATTTAGGGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTCCTTAAATGGATTACAAAATTGGTTATCAAGCAGTGAAGCTTTTACCAAATATATTCGACTTGAAGCATCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTAAAAGTAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGGTCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTGTTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGCTTGTCTTCCTTCCTAGAAGTGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCCTTGCTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGCCTCCTTTCACTCTCCTTAAATTAAAGCCTAACGTAATCATCACCATAGTACATCTCATCTTCTAG 885 38.08 MTYVVVTKDNCISATTRFNLIFLLISVKSSLIFIWPLTCTYLSVWLTILELKCIHCLSSVLFFVHVIFLVWWIPDNFFLVYLIKVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVRKWLKFDVIIQPPFTLLKLKPNVIITIVHLIF 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8370606 8371624 + CmoCh04G016380.1 Cmo04g01638 380613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01638 294 Gene3D - 82 157 - -
Cmo04g01638 294 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 84 273 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cmo04g01638 294 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 82 146 IPR029061 -
Cmo04g01638 294 Gene3D - 158 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01638 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 339.732
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01638 Cmo_Chr04 FPKM 147.02388 145.636017 194.617188 183.30481 57.732635 65.533302 61.469467 377.71347 408.888458 413.432922