Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01639 ATGGAACTCCAAGATGCTTTATTTATGTCTCAATGTGAAGAAAATGACTGCATAATCGAGGTTGAAAGTTCCATTGATGCCAATACTTCCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGACCATGGTTTACGGATCTTTTCAAGGCTTTATTTTGAAGAATCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATACACATTGTTCAGAATCCCTTTATGTGCTCCAACTACAACCTCATCTAGTTCTATTGATCAAGTCAATCGGGGGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTTGAGGACGGAAGTCTTGGGCTTGGTGAGGTTTCACCCCTTGAAATTCACAAAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTTCTTCATATATTTAAGGGAGCCAAGATCAGCAGCTCCATTCCTCTACTACGGGGTTCATTTTCATCTTGGATTTTCCATGAACTGGGAATACATCCACGTTCGATCTATCCAAGTGTTAGATGTGGCTTGGAAATGGCTGTTCTTAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCGGTTAGTTGAAGAAGACGACTTGTCATCTTCGTCAAAAGTTAAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTAGCTCGTGTTGCTAAGACACTGGTCGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAAGGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAGATTGAACTCCGTGTTGATGCCAATCGGAATTGGAGCTATGAAGAAGCTATTCTATTTAGCTCTTTGGTGAAGGACTGTGGCTTGCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTGTTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTATCGATGGTATTCAAGATAATCCTGTGAAAGAACTTGCAAAGTATGTTCATCCCGGAATTGTTGCTATAGTTATAAAACCCAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCAAGGTGGGCACAGCAACACGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATACATACACTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAATAAGAAAACTGATGGATATTCAACCAGCTCCATCTATAGCCCATGGTCTAGGAACTTTCCGTTGGCTTGACGAAGATGTAACTGTCAATCCTCTCAGAATTGGTCGTGACCCTCATAGTGGCATTATAGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAAAAGTTTTCAAATCAACCAGAAGGTTGTTTGTAGAAAGTTTACTGAAGAGCAAGTTCGTAGGTACAAATTAACTGTAGACTCAAAGGGGTTCTCTTATTTAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTATTATTTCTTCATGGATTTCTTGGGACTGGTGAAGACTGGATTACAATCATGAAGGCCATCTCAGGTTCAGCTAGATGCATTTCTATTGACCTTCCTGGTCATGGGGAATCAACAACACAAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTTTTCTATGGAGGTTGTTGCTAATCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTAACCTCGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGCTGATAAGATTGGAAGAGCTGCTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGAAGAATCCGGAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGCCTATGGTTTAGAGAGCTTTCTTGAAGCATGGTATCGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATCGAAGCATGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGAAGATCAAGGATGACCCAGTTGTTTCCCTCCATGAAATAGTCGAGATCCCGGACTCAGGACATGCTGCCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAAATTTCTAATAAGGAGTAGAACACAGTTATCCTACAATTCAGACTTCTCAGAAAGCATCAAGGCGTTAAATGCGCCTGAGAATGCCATCACAGTTGAAAGTAGAAAGGCATGGAAAGTTGACGGAAGGCCTTTGAAGATTACAGTAGGCACAGGATTCCCATTCACTTGCTCATAA 2382 41.23 MELQDALFMSQCEENDCIIEVESSIDANTSFHSVLRKFTCQAVDHGLRIFSRLYFEESVSPGLFLCKISRMEYTLFRIPLCAPTTTSSSSIDQVNRGFFREGFILSLFLEDGSLGLGEVSPLEIHKENLLDVEEQLKCLLHIFKGAKISSSIPLLRGSFSSWIFHELGIHPRSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHRLVEEDDLSSSSKVKICGLLDSGGTPSEVARVAKTLVEEGFPAIKLKVARQGNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIVKFCEESGLPVALDETIDGIQDNPVKELAKYVHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNAEIRKLMDIQPAPSIAHGLGTFRWLDEDVTVNPLRIGRDPHSGIIEASVAEANRLLKSFQINQKVVCRKFTEEQVRRYKLTVDSKGFSYLIKVLEVGQRTNDNVLLFLHGFLGTGEDWITIMKAISGSARCISIDLPGHGESTTQKNDCDVHGVEEPSFSMEVVANLLYKLIHHLAPGKVNLVGYSMGARIAMYMALRFADKIGRAAIISGSPGLKDKMARRIRRVKDDSRARILKAYGLESFLEAWYRGELWKSLREHPHYSQIIASRSKHDDVQHLAKALSDLSIGRQPKIKDDPVVSLHEIVEIPDSGHAAHLENPLAVINALSKFLIRSRTQLSYNSDFSESIKALNAPENAITVESRKAWKVDGRPLKITVGTGFPFTCS 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8376170 8381808 + CmoCh04G016390.1 Cmo04g01639 380614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01639 793 Gene3D - 69 209 IPR029017 -
Cmo04g01639 793 PANTHER O-SUCCINYLBENZOATE SYNTHASE-RELATED 9 702 - -
Cmo04g01639 793 SUPERFAMILY alpha/beta-Hydrolases 501 738 IPR029058 -
Cmo04g01639 793 SFLD o-succinylbenzoate synthase 68 444 - -
Cmo04g01639 793 PANTHER - 9 702 - -
Cmo04g01639 793 Pfam Enolase C-terminal domain-like 234 426 IPR029065 -
Cmo04g01639 793 SMART MR_MLE_2 230 326 IPR013342 -
Cmo04g01639 793 Gene3D - 210 450 IPR036849 -
Cmo04g01639 793 SFLD muconate cycloisomerase 68 444 - -
Cmo04g01639 793 Pfam alpha/beta hydrolase fold 511 619 IPR000073 -
Cmo04g01639 793 SUPERFAMILY Enolase N-terminal domain-like 67 202 IPR029017 -
Cmo04g01639 793 SUPERFAMILY Enolase C-terminal domain-like 226 445 IPR036849 -
Cmo04g01639 793 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 278 309 IPR018110 GO:0009063
Cmo04g01639 793 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 100 408 - -
Cmo04g01639 793 Gene3D alpha/beta hydrolase 505 738 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01639 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 1306.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01639 Cmo-Chr4:8376170 Cmo15g00056 Cmo-Chr15:313512 2.43E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1015 . . . . . . . . Cmo04g01639 . . . . . . . . Bhi07g01426 . . . . . . . . . . . . . . . . . . Csa05g02543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01639 Cmo_Chr04 FPKM 106.492905 111.698074 139.60347 134.46727 81.107857 88.812424 82.868591 173.556671 179.465698 173.303909