Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01641 ATGGATAATTCCATCAGCTGTTCGCATAGCATGTTTTCGGATATGAGATTTGGCGAGACGACTCTCACCAGTATGCCAGAGGCTGTGGTTGAGCCATTTAGCTCTACTGTTTGGGAACAAGCAGCTAATTCCCAAAACATGGGAACTAGCAAGGCTAGTGGCTGTCCAGTTTCTTTGAGTACTGATATCAGCTGGAACCTATCACATAATATGTTTAAAGGGGGGATTTATCTACCTCACGGCGTGCTCCCACAGAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGCTCTCCTGTTTTAGTGGTGATATTGTTGGCCATTTCAACATTCATGAGCCTCCTATGAGTGTTTCAATCCCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGCTTGGTTTCTGGAATTGAAGGACAATCTCAGAGAACTAATGAACATGGAGCTGATGAAAATGGAAGACCTTTGAAAGTGGATGATCGTGGTAAACAAGCTACTGATGGTTCTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGCGGTGATGGGCCATGTGCGTTAGAGGTCACAGCCAACCAAGTTTCTGGCAAGGGCCGGAAAAGGAAAAGAAGTGGACAGGTAATGAATAATGATTCTTGTTCTGATCAACCCAATGGACCTCTGCAACAAGCTACTGTTTCAGCTAAGAATGATACTCAAAATCAGCCAAAAGGAGATCAAAATCCAAGCTCAACTGCTAACAAGGCTGCAGGAAAACATGGTAAACAGGCGTCTCAACCTTCAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGACGGGGCCAGGCGACGAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACCGGAAAGGCGGTGATGCTAGACGAAATCATTAACTATGTCCAATCGCTGCAACGACAAGTCGAGTTCTTATCGATGAAACTCGCTACCGTGAATCCAAGGATGGATATCAACATCGACGGGCTCCTAGCCAAAGATATTCTTCAATCACAAGCTGGTCCATCATTGACATATATGCCCACCGGTTGTCCCCCGCCTCGTGTTTCTCATCAACGACTTATTCCAAGCGGTTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGGAAAATGAGTTCCCAGATGAATCCAAGGTCTATTGGATTTAAGGAGCCTTCTCAGATAAAGAGTGTGTGGGATGGTGAGCTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCTCAATTGTTTAGAACTCGAAGGATCTGATTCACCAGGCAATACAAAAGTTGCACATTGA 1395 45.3 MDNSISCSHSMFSDMRFGETTLTSMPEAVVEPFSSTVWEQAANSQNMGTSKASGCPVSLSTDISWNLSHNMFKGGIYLPHGVLPQSLSQLPADSSFIERAARLSCFSGDIVGHFNIHEPPMSVSIPERWDEIPRNGLGLVSGIEGQSQRTNEHGADENGRPLKVDDRGKQATDGSSANESDEAEFSGGDGPCALEVTANQVSGKGRKRKRSGQVMNNDSCSDQPNGPLQQATVSAKNDTQNQPKGDQNPSSTANKAAGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDINIDGLLAKDILQSQAGPSLTYMPTGCPPPRVSHQRLIPSGFPAIGSSEMLRKMSSQMNPRSIGFKEPSQIKSVWDGELQNIVQMSFGMSTTLNCLELEGSDSPGNTKVAH 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8388080 8390674 + CmoCh04G016410.1 Cmo04g01641 380616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01641 464 Gene3D - 281 354 IPR036638 GO:0046983
Cmo04g01641 464 MobiDBLite consensus disorder prediction 150 172 - -
Cmo04g01641 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983
Cmo04g01641 464 SMART finulus 290 340 IPR011598 GO:0046983
Cmo04g01641 464 Pfam Helix-loop-helix DNA-binding domain 287 335 IPR011598 GO:0046983
Cmo04g01641 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 353 IPR036638 GO:0046983
Cmo04g01641 464 PANTHER TRANSCRIPTION FACTOR BHLH49 36 462 - -
Cmo04g01641 464 MobiDBLite consensus disorder prediction 214 261 - -
Cmo04g01641 464 CDD bHLH_AtBPE_like 274 359 - -
Cmo04g01641 464 MobiDBLite consensus disorder prediction 136 271 - -
Cmo04g01641 464 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 462 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01641 Cmo15g00881 CCT
Cmo04g01641 Cmo18g01098 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01823 Cmo-Chr1:13357555 Cmo04g01641 Cmo-Chr4:8388080 1.35E-56 dispersed
Cmo04g01641 Cmo-Chr4:8388080 Cmo15g00881 Cmo-Chr15:4461494 6.66E-110 dispersed
Cmo17g01261 Cmo-Chr17:9935909 Cmo04g01641 Cmo-Chr4:8388080 3.77E-47 dispersed
Cmo19g00689 Cmo-Chr19:7294534 Cmo04g01641 Cmo-Chr4:8388080 2.91E-48 dispersed
Cmo18g01098 Cmo-Chr18:11457766 Cmo04g01641 Cmo-Chr4:8388080 9.10E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9642 PF00010 HLH 4.90E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01641 - - cmax:111488734 889.797