Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01645 ATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTCTCTGAGGAAATGCGGGATACTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCCCGCCTCGAAGCGGAATCTGTCACTCCCTCCTTCGTTCTGGGCCAGAACGACCCAGTTTGTGAGATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTAGTTTCTACTTTGAGTGAAACTGTAGTGGACGGCGTTCTTGAGAGTTTGAATATTCAGAATCCTGATGTTGCTGTGGCATTTTTCTATTTGTTGAGAAATAAGTACGGATTTCGGCATTCCGGATTCTCCCAGCTTGCCGTTTCTCATATTCTAGCGGGTAAAGGAAGATTCAAGGAGTTGCATTGCGTTATAAAGCAATTGGTTGAGGAGCAAGGGTCGGGTTCTGCATCTTCCTTTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATGGTGTGGTATGGGATATGCTGGCATTTGCGTATTCTAGACATGAAATGATCCATGATGCCCTCTTTGTCGTCGCAAAAATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTAAGGCACACTGATGTCATGTGGGATATATGCAATGAGATCAAAGCTAGTGGAGCTCCTCAGAGTGAATATACTACCTCAATACTTATACACGGCCTATGTGCGCAGTCCAAGTTACAAGATGCGATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCGTTATGTCAAAGTTTTGTAAAGTGGGGCTAGTAGATGTTGCAAGGTCATTTTTCTGTTTGATGGTCAAGAATGGACTTCTTCCTGATTCGTACAGTTATAATATTCTTATTCATGGGTTATGTGTAGCAGGTTCCATGGATGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAGCCTGATGTAGTAACATACAACACACTTGCTAAAGGTTTTCTCTTGCTTGGTTTTATGAGTGGGGCCTGGAAAGTCGTCCAGAAAATGTTGCTAAAAGGTCTAAATCCGGATATCGTGACATATACAATACTGATATGTGGGCACTGTCAAATGGGAAATATTGAGGAAGCCCTTAAGCTGCGGCAAGAAACCCTTTCAAGGGGGTTTCAGTTGAACATCATTTCTTACAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGAATAGAAGAAGCATTGGCATTGCTCAATGAAATGGAAACTCTACGTTTGAAACCTGATCTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTACAAAGGGCTTACCAACTATATGAACAAATGCGTTTGAAGAGAAATTTTCCTAACTACTTTGCTCAACGTGCTGTACTTTTGGGTTTCTTTGAGAATGGAAATATTTCTGAGGCAAGAAGATATTTTGATGCTTTGACTCATATGGATCTGATAGAGGATATTATTTTGTATAATATTATGATTGATGGTTACGTAAGGCTTGGTGATATTTCTGAGGCTATGCAGCTATATTACAGAATGTTTGAAAGGGGGATTACTCCAACTGTTGTCACTTTCAACACTCTTGTCCATGGGTTTTGCAGAAATGGAGACCTAGTGGAGGCTCGAAAGATGTTCGAAATCATTAGGTTGAATGGATTGCTACCCAGTGTAGTAACTTATACTACCCTTATGAATGCGTACTGTGAAGCGGGAAACATGCAGGAAATGTTTGATCTACTCCATGAGATGGAAGCAAATGCTGTTGTTCCAACTCATATAACTTATACTGTACTAATCAAAGGACTCTGCAGACAGAATAAAATGCATGAAGCCCTCCAGTTACTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCAGATTACATATAATACTATTATCCAATGTTTTTGCAAGGCCAGAGACATTGCAAAAGCTTTCCAGGTTTATAATGAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAATGTACTTATTAGTGGTCTTTGTGTATATGGTGACCTAAAGGATGCTGATCGAATGCTGGTTTCTATGGAGGATCAAAATATTAGCTTGACAAAAGTTGCTTATATGACAATTATTAAGGCACATTGTGCAAAGGGTCAGGTGTCTAAGGCATTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTCATTTCCATCAGAGATTATAGTGCTATCATTAATAGGCTGTGCAAAAGGGGTCTAATTACTGAAGCAAAGTACTTATTTGCTATGATGTTATCTGAAGGTGTAACGCCTGATTCTGAAATCTGCGAGACAATGCTTAATGCTTTCCATCAACATGGTGATAGCAGTTCAGCATTTGAATTTCTTGCTGTGATGGTTAAATCTGGCGTCATTTCACATTGA 2502 39.85 MLSRIHQWKPLHSLRKCGILASFSSVILARPSVSAARLEAESVTPSFVLGQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDGVLESLNIQNPDVAVAFFYLLRNKYGFRHSGFSQLAVSHILAGKGRFKELHCVIKQLVEEQGSGSASSFCDLLLNKFRNWDSNGVVWDMLAFAYSRHEMIHDALFVVAKMKDLNLQASVPTYNSLLHNLRHTDVMWDICNEIKASGAPQSEYTTSILIHGLCAQSKLQDAISFLQDSNEVVGPSIVSINTVMSKFCKVGLVDVARSFFCLMVKNGLLPDSYSYNILIHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGFMSGAWKVVQKMLLKGLNPDIVTYTILICGHCQMGNIEEALKLRQETLSRGFQLNIISYSVLLSCLCKVGRIEEALALLNEMETLRLKPDLIVYSILIHGLCKEGFVQRAYQLYEQMRLKRNFPNYFAQRAVLLGFFENGNISEARRYFDALTHMDLIEDIILYNIMIDGYVRLGDISEAMQLYYRMFERGITPTVVTFNTLVHGFCRNGDLVEARKMFEIIRLNGLLPSVVTYTTLMNAYCEAGNMQEMFDLLHEMEANAVVPTHITYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDQITYNTIIQCFCKARDIAKAFQVYNEMLLHNLDPTHVTYNVLISGLCVYGDLKDADRMLVSMEDQNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYLFAMMLSEGVTPDSEICETMLNAFHQHGDSSSAFEFLAVMVKSGVISH 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8395312 8398989 - CmoCh04G016450.1 Cmo04g01645 380620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 798 832 IPR002885 -
Cmo04g01645 833 SUPERFAMILY TPR-like 343 512 IPR011990 GO:0005515
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 409 497 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 78 220 IPR011990 GO:0005515
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Cmo04g01645 833 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 17 831 - -
Cmo04g01645 833 Pfam PPR repeat 373 403 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 653 722 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 498 581 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 582 652 IPR011990 GO:0005515
Cmo04g01645 833 SUPERFAMILY HCP-like 494 688 - -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Cmo04g01645 833 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 17 831 - -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 723 832 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 221 330 IPR011990 GO:0005515
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 331 408 IPR011990 GO:0005515
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 730 763 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 767 799 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 660 693 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 625 658 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 450 482 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 695 727 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat 804 830 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat 730 758 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat 767 795 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 657 705 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 587 636 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 272 320 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 413 461 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 518 566 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01645 - - - bhj:120081514 1490.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01645 Cmo-Chr4:8395312 Cmo11g00887 Cmo-Chr11:4542584 1.28E-88 dispersed
Cmo04g00287 Cmo-Chr4:1444475 Cmo04g01645 Cmo-Chr4:8395312 9.42E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01645 Cmo_Chr04 FPKM 1.596273 1.853405 0.0 0.270933 0.0 0.0 0.0 0.0 0.0 0.0